Gene detail

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Gene detail information of Glyur000041s00007091.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G26340.1	2.00E-32	F-box/RNI-like/FBD-like domains-containing protein
NR	KEH19807.1	2.45E-127	F-box/RNI/FBD-like domain protein [Medicago truncatula]
Swissprot	tr\|Q8H1R7\|FDL27_ARATH	1.00E-37	F-box/FBD/LRR-repeat protein At4g26340
trEMBL	tr\|A0A072TQY2\|A0A072TQY2_MEDTR	9.00E-128	F-box/RNI/FBD-like domain protein {ECO:0000313\|EMBL:KEH19807.1}

Sequence

Transcript Sequence

>Glyur000041s00007091.1
ATGGCGGACTCAAGCTGCAAACGACGGGAATCGGAAGAAAACGCGGACACGGACAGGATCAGTAGTCTACCGGAGTCATTGCTGTTCCACATCCTGACCTTCCTCCCGACCAAAACCTGCGTGGCCACGAGCATCCTCTCTCGCATGTGGCTCCACCTCTGGAAGCATCTCCAGGTGTTCGACTTCGATGACGACGTTCACTACCGCGGGGAGCCCTCCGAACGGTTGCAACGGTTCCAAAGGTTCGCCGTTTTCGTGAACGGCGTGCTCTCCCTCCGCAGTTCCCGCCAAATCCGAAAGATGCGACTCTCCTGTGGCCACTCCGTCACGGACAGAGTCTACGCTCACTCAATCGACAAGTGGATCCTCACCGCCGTTGGGCCCCACCTCCAGGAGATCCACCTCACACTCGTTTCCTCCGACAGACCCCGACGATACGACCGCGTCCTTGGACCCAGCTTCCTCATCCCTGTCGCCCTCTTCAACGGCCCTAACCTTGTCTCCCTCAGGCACATCACATCCATCCAAACACTTCCATCATCTTTTTTTTATTCCTTGTTCTTAATATGTGATAACTACTTGTATCGCCGGCTTTGCNGTGGAATACATGTGCGTGTGCANTGCTCTTCGGCGGTTCGTTTACCATCGCTGAAGATGCTGGAACTCGAAATTGGTTGTGTGCATGTGGATTCCGTGAATACCCTCCTCTCTGGCTGCCCCATACTGGAAACTCTGAATCTTACCTTTTTTGCCAAATTTTCCACCAAAGTTTGCATCCCACCTTTGCCTTCCTTGAAGAGGTTGAAATTCAGGGCTCGGATAGATAGTGGCTACTTACTGCCCCAGCCCCCAGTTCTAGATTTTCCGGAATTTCGCTATTTACTTCATTTGGAACTCAAATGTCATGTGCTTCAAGTTCTTATAATTAACAGCAACAAGGATGATCCATCACGTTATCCACCAAGTTCACCAAGTTTGGCACTGCTCTCAACAAGCGTTCCCAATTGTCTCGTATCTCACCTGACCTCTTTTCACTTCGACGGATATCGGGGATTTGAAGATGAGCTGGCATTTGCTGAGTATATTTTCAGTAATGGACTTGTTTTGAAGACAATGACTTTCATTGATTTTTTTACTTCGTTGGACCTGAGCAAAAAGAATCGTATTCTTGAAAGATTTTCTGATATACCAAGGGGCTCTGCCATTCACATAAAGCAAACGACGATGGCGGAATCACCCTCCAAACGACGCGAATCGGAAGAAAACGCGGACAGGATCAGTGTTCTACCGCAGTCCGTGCTGTGCCACATCCTGTCGTTTCTCCCCACCAAAACCTGTGTGGCCATGAGCTTGCTGTCTCGCAGGTGGCTTCACCTATGGGAGCATCTCCAGGTGTTCGACTTCTACGACAACTCCCTCGAGTTCGACGACGGCGATGAACAGTCCGAACAGTTCCGAAGCTTCGCCGTTTTCGTGAGCGGCGTGCTCTCCCTCCGCAGGTCCCGCGACATCCGGAAGATGCGCCTCTCATGTGCCCACTCCCTCAATGACACGTTCTACGCCCAATCGGTCGACACGTGGATCTACTCCGCCATTGGGCCCCACCTCCAGGAACTCCATCTCTCCCTCGTTTCCACCGACGGACGCGGCTTCGTGCTCCCCCATCTAAGCGGTGGAATACATGTGCAAGTGCAACGGTCTACGGTTGTTCGTTTACCGTCATTGAAGACGCTTCAAATCGACGTGGGTTATGCGGATGTGGATTACTTGAATGTGTTCTTCTCCGGCTGCCCCATTCTCGAAACGCTGGACCTTACCTTTTCTCCCAAATTCCTGAACAGAGTCCGCGTGCCACGTTCCCTCAAGAGGCTGAAACTCACCGTTGAGAATGACGTTGCGGCCTTCCTCCATGTAGACGCGCCGGGCCTCAAGTACCTCTGCATCACGAAAGTCTCATTGCGCTACTTTGGCGACTTGCACAACGTGGTGGAAGCGGATATCGCCACCTTTTCCCGGTCTGAGTCTCCGGTCGCTTTGCTCAGATTCCTCACAGCTCTCTCCGGAACAAAATATCTAGTGTTGCGTCTTTCCACCATAAAGTGGCTACTTGGTCCCCCGTGTCCTGATTTTCCAGAATTTCGCTATTTACTTCGTCTAGAGCTCATACTTCCCTGTTTCGACCCGCATTTTCTGGGCAACGTGCTTAAGAAATGTCCTATGCTTCAAGTTCTCATAGTTCAGAATGATCAGGAACCATCCGGGCGTATATATTGGCCGCGTCCGCCAACACCTGTTCCTAATTGTCTCGTATCTCACCTGACTTCTATCCACTTAAAAGGATTTGAAGGATTTTTAAATGAGATGGAATTTACTGAATATATTTTGCTAAGTGGACTTGTTCTGAAGACAATGATTATTACTGATATTACATTGGACCTGAGCAACAAGCACTCTATTCTCAAAAAGTTGTCTGATATGCCAAGGGGCTCTGCCATGATGAGTAGTCTACCGGACTCTGTGCTGTGCCACATCCTATCATTCCTTCCGACCAAAACCTGTGTGGCCACCAGCCTCGTGTCTCGCAGGTGGCGCCACCTCTGGGAGTATCTCCAGGTGCTCGACTTAGCCGACGACTCTTACTATTTCGAAGATAAAGAGTTTGAATTGTTCAGAAGGTTCGCCGTTTTCGTGAATGCTGTGCTCGCTCTCCGCAGATCCCGCGACATCCGAAAGATGCGCCTCCGCTGTGGCTTCTCCGATAAGGACACGTTTTATGCCGACTCCATCGCCACTTGGGTCCGTGCCGCCATTGGGCCCCGCCTTGAAGAACTGACTCTCGTCCTTTTCAGCAGTTCTCANATCAGAGAGAGAAAACTCTTTGTGATCCCTTCCACCATCTTTACTTGCACCAACCTCGTATCTCTCAGATCACAAGCTGTCCATTTGAAAGTGGAACACTCTTCGGCGGTTCGTTTACCATCATTGAAGGAGCTGCTACTCAATATCAGTTACGCGGATGCGGATTCCGTGAATCACCTCCTCTCTGGCTGCCCCATCCTGGAAAGTCTGACTATTCGAATTGCTGCCACTGATCCTTCCAAGAAAATTCGCATGCCACCTTCCTTGAAGTTGTTGTTCTTCAACGTCTATCAGAATTGCCTTGATATAGACACGCCGGATCTTAAGTACCTTAACATCACCCAATCCAAATTAGGCGCTATTGGCAACTTGCAGTTGCAGAACGTGGTTGAAGCGCATGTTGATGTCTATTCCTTTTATCTATCTGCCGACACTTCACTCAAAATCCTCCACCTCCTCCNAGCTCTCTCCGGAACAAAACATCTAGTGTTGTCTTGTTCCACAACCGAGTTGCTACTTTGTGCCCCAGTTCTAGATTTTCNGGAATTTCGCCATTTACTTCATCTAGAGCTCATTCTTCCTCGTTTCAACTCCAATCTTGTAGTCAACGTGCTCCAGAAATGTCATATGCTTCAAGTTGTCATAATTCAGAACGACAAGCCAACAAATGTTCCTATTTGTGTCGTATCTCACTTGACCTCTATTCACTTCAAAGGATATCAAGGAACTGAAGATGAGCTGGCATTTGCTNACTATATTTTGCGGAATGGACTTGTTTTGAAGATAATGACTATTGCTAATATTTCTTTGGACCTAAGCAACAAGTACTCTATTCTCAAAAGATTATCCGACACACCAAGGGGCTCTGCCATGTGCCAACTTAAATTTGATTTTGACCAAGCTCCTTAA

Protein Sequence

>Glyur000041s00007091.1
MADSSCKRRESEENADTDRISSLPESLLFHILTFLPTKTCVATSILSRMWLHLWKHLQVFDFDDDVHYRGEPSERLQRFQRFAVFVNGVLSLRSSRQIRKMRLSCGHSVTDRVYAHSIDKWILTAVGPHLQEIHLTLVSSDRPRRYDRVLGPSFLIPVALFNGPNLVSLRHITSIQTLPSSFFYSLFLICDNYLYRRLCXGIHVRVXCSSAVRLPSLKMLELEIGCVHVDSVNTLLSGCPILETLNLTFFAKFSTKVCIPPLPSLKRLKFRARIDSGYLLPQPPVLDFPEFRYLLHLELKCHVLQVLIINSNKDDPSRYPPSSPSLALLSTSVPNCLVSHLTSFHFDGYRGFEDELAFAEYIFSNGLVLKTMTFIDFFTSLDLSKKNRILERFSDIPRGSAIHIKQTTMAESPSKRRESEENADRISVLPQSVLCHILSFLPTKTCVAMSLLSRRWLHLWEHLQVFDFYDNSLEFDDGDEQSEQFRSFAVFVSGVLSLRRSRDIRKMRLSCAHSLNDTFYAQSVDTWIYSAIGPHLQELHLSLVSTDGRGFVLPHLSGGIHVQVQRSTVVRLPSLKTLQIDVGYADVDYLNVFFSGCPILETLDLTFSPKFLNRVRVPRSLKRLKLTVENDVAAFLHVDAPGLKYLCITKVSLRYFGDLHNVVEADIATFSRSESPVALLRFLTALSGTKYLVLRLSTIKWLLGPPCPDFPEFRYLLRLELILPCFDPHFLGNVLKKCPMLQVLIVQNDQEPSGRIYWPRPPTPVPNCLVSHLTSIHLKGFEGFLNEMEFTEYILLSGLVLKTMIITDITLDLSNKHSILKKLSDMPRGSAMMSSLPDSVLCHILSFLPTKTCVATSLVSRRWRHLWEYLQVLDLADDSYYFEDKEFELFRRFAVFVNAVLALRRSRDIRKMRLRCGFSDKDTFYADSIATWVRAAIGPRLEELTLVLFSSSXIRERKLFVIPSTIFTCTNLVSLRSQAVHLKVEHSSAVRLPSLKELLLNISYADADSVNHLLSGCPILESLTIRIAATDPSKKIRMPPSLKLLFFNVYQNCLDIDTPDLKYLNITQSKLGAIGNLQLQNVVEAHVDVYSFYLSADTSLKILHLLXALSGTKHLVLSCSTTELLLCAPVLDFXEFRHLLHLELILPRFNSNLVVNVLQKCHMLQVVIIQNDKPTNVPICVVSHLTSIHFKGYQGTEDELAFAXYILRNGLVLKIMTIANISLDLSNKYSILKRLSDTPRGSAMCQLKFDFDQAP

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00041	104337	123574	+

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000041s00007091.1	PF00646.28	F-box	19	57	2.30E-05
Glyur000041s00007091.1	PF08387.5	FBD	331	374	2.60E-13
Glyur000041s00007091.1	PF00646.28	F-box	425	462	1.30E-06
Glyur000041s00007091.1	PF08387.5	FBD	758	806	1.10E-10
Glyur000041s00007091.1	PF00646.28	F-box	834	867	4.20E-09
Glyur000041s00007091.1	PF08387.5	FBD	1173	1218	1.60E-14

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.429
SRR1783600	control	0.465
SRR1783602	moderate drought stress	1.790
SRR1811619	moderate drought stress	1.723

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.714
DRR006520	Root Summer glycyrrhizin high producing strain	0.916
DRR006521	Root Winter glycyrrhizin high producing strain	0.405
DRR006522	Root Winter glycyrrhizin high producing strain	0.404
DRR006523	Root Summer glycyrrhizin low producing strain	0.929
DRR006524	Root Summer glycyrrhizin low producing strain	0.804
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.025
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.025

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.073
SRR2868004	Drought Stress(Tissue:root)	0.178
SRR2967015	Control (Tissue:root)	0.056

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.083
SRR9715740	Leave	0.025
SRR9715741	Leave	0.305
SRR9715739	Root	2.085
SRR9715742	Root	1.584
SRR9715743	Root	1.361

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.330
SRR8749028	MeJA induced 9h	4.146
SRR8749029	MeJA induced 9h	3.949
SRR8749030	Uninduced	3.524
SRR8749031	Uninduced	1.851
SRR8749032	Uninduced	1.999

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.888
SRR8400027	Control-Root	1.279