Gene detail information of Glyur000041s00007116.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G15550.12.00E-98gibberellin 3-oxidase 1
NRXP_004486708.10PREDICTED: gibberellin 3-beta-dioxygenase 1-like [Cicer arietinum]
COGYP_167879.17.00E-24oxidoreductase, 2OG-Fe(II) oxygenase family [Ruegeria pomeroyi DSS-3]
Swissprottr|O24648|G3OX_PEA0Gibberellin 3-beta-dioxygenase 1
trEMBLtr|A9P5X2|A9P5X2_MEDSF0Gibberellin 3-beta-hydroxylase {ECO:0000313|EMBL:ABP37818.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00041294776296432-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K04124E1.14.11.15 EC:1.14.11.15 Diterpenoid biosynthesis map00904


Gene Ontology

biological_process

GO:0055114  oxidation-reduction process


molecular_function

GO:0016491  oxidoreductase activity

GO:0016706  oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000041s00007116.1PF14226.1DIOX_N581351.60E-17
Glyur000041s00007116.1PF03171.152OG-FeII_Oxy1862823.50E-26


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.745
SRR1783600control3.713
SRR1783602moderate drought stress0.501
SRR1811619moderate drought stress0.495

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain0.000
DRR006520Root Summer glycyrrhizin high producing strain0.098
DRR006521Root Winter glycyrrhizin high producing strain0.061
DRR006522Root Winter glycyrrhizin high producing strain0.000
DRR006523Root Summer glycyrrhizin low producing strain0.135
DRR006524Root Summer glycyrrhizin low producing strain0.199
DRR006525Leaf Summer glycyrrhizin high producing strain9.210
DRR006526Leaf Summer glycyrrhizin high producing strain9.201

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)1.194
SRR2868004Drought Stress(Tissue:root)0.183
SRR2967015Control (Tissue:root)0.405

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave2.341
SRR9715740Leave6.304
SRR9715741Leave2.881
SRR9715739Root0.039
SRR9715742Root0.342
SRR9715743Root0.271

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h0.000
SRR8749028MeJA induced 9h0.000
SRR8749029MeJA induced 9h0.170
SRR8749030Uninduced0.027
SRR8749031Uninduced0.000
SRR8749032Uninduced0.000

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root1.792
SRR8400027Control-Root5.517

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved