Gene detail information of Glyur000041s00007128.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80400.1 | 1.00E-120 | RING/U-box superfamily protein |
| NR | KHN44137.1 | 0 | E3 ubiquitin-protein ligase [Glycine soja] |
| Swissprot | tr|Q93Z92|RING4_ARATH | 5.00E-40 | E3 ubiquitin-protein ligase At4g11680 |
| trEMBL | tr|I1M5N3|I1M5N3_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G43770.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00041 | 400322 | 404642 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000041s00007128.2 | PF13639.1 | zf-RING_2 | 364 | 406 | 4.00E-15 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.156 |
| SRR1783600 | control | 18.233 |
| SRR1783602 | moderate drought stress | 18.103 |
| SRR1811619 | moderate drought stress | 17.834 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 12.889 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 12.914 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 14.398 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.089 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.098 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.289 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.857 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 10.322 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 18.302 |
| SRR2868004 | Drought Stress(Tissue:root) | 20.039 |
| SRR2967015 | Control (Tissue:root) | 20.795 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 20.179 |
| SRR9715740 | Leave | 23.590 |
| SRR9715741 | Leave | 20.138 |
| SRR9715739 | Root | 4.634 |
| SRR9715742 | Root | 11.772 |
| SRR9715743 | Root | 13.604 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 21.212 |
| SRR8749028 | MeJA induced 9h | 20.193 |
| SRR8749029 | MeJA induced 9h | 13.639 |
| SRR8749030 | Uninduced | 10.867 |
| SRR8749031 | Uninduced | 7.038 |
| SRR8749032 | Uninduced | 4.523 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 22.640 |
| SRR8400027 | Control-Root | 24.892 |