Gene detail information of Glyur000042s00005032.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G37650.15.00E-163GRAS family transcription factor
NRXP_003538789.10PREDICTED: protein SHORT-ROOT-like [Glycine max]
Swissprottr|Q9SZF7|SHR_ARATH0Protein SHORT-ROOT
trEMBLtr|I1LH59|I1LH59_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G05110.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold0004221553648-


Gene family

Gene familysubfamily
Transcription Factors FamilyGRAS


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0008356  asymmetric cell division

GO:0009956  radial pattern formation

GO:0048366  leaf development


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000042s00005032.1PF03514.9GRAS1224961.10E-106


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control3.433
SRR1783600control3.018
SRR1783602moderate drought stress1.425
SRR1811619moderate drought stress1.409

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain10.608
DRR006520Root Summer glycyrrhizin high producing strain9.595
DRR006521Root Winter glycyrrhizin high producing strain0.149
DRR006522Root Winter glycyrrhizin high producing strain0.109
DRR006523Root Summer glycyrrhizin low producing strain7.382
DRR006524Root Summer glycyrrhizin low producing strain6.777
DRR006525Leaf Summer glycyrrhizin high producing strain8.324
DRR006526Leaf Summer glycyrrhizin high producing strain8.484

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)48.288
SRR2868004Drought Stress(Tissue:root)72.991
SRR2967015Control (Tissue:root)70.430

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.817
SRR9715740Leave7.475
SRR9715741Leave8.818
SRR9715739Root7.702
SRR9715742Root18.151
SRR9715743Root14.229

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h1.791
SRR8749028MeJA induced 9h1.693
SRR8749029MeJA induced 9h2.049
SRR8749030Uninduced0.838
SRR8749031Uninduced0.540
SRR8749032Uninduced1.315

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.820
SRR8400027Control-Root4.997

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved