Gene detail information of Glyur000042s00005035.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G67530.10plant U-box 49
NRXP_004511837.10PREDICTED: peptidyl-prolyl cis-trans isomerase-like 2-like isoform X1 [Cicer arietinum]
COGYP_005845634.14.00E-28peptidyl-prolyl cis-trans isomerase A [Ignavibacterium album JCM 16511]
Swissprottr|Q9FJX0|PPIL2_ARATH0Peptidyl-prolyl cis-trans isomerase CYP65 {ECO:0000305}
trEMBLtr|G7K2I6|G7K2I6_MEDTR0Peptidyl-prolyl cis-trans isomerase-like protein {ECO:0000313|EMBL:AES94537.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00042832813726-


Gene family

Gene familysubfamily
Ubiquitin FamilyU_box


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10598PPIL2, CYC4, CHP60 EC:5.2.1.8 Ubiquitin mediated proteolysis map04120


Gene Ontology

biological_process

GO:0000413  protein peptidyl-prolyl isomerization

GO:0006457  protein folding

GO:0016567  protein ubiquitination


molecular_function

GO:0003755  peptidyl-prolyl cis-trans isomerase activity

GO:0004842  ubiquitin-protein transferase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000042s00005035.1PF04641.7Rtf2921631.50E-06
Glyur000042s00005035.1PF00160.16Pro_isomerase4185187.40E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.028
SRR1783600control9.856
SRR1783602moderate drought stress11.494
SRR1811619moderate drought stress11.612

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.736
DRR006520Root Summer glycyrrhizin high producing strain16.469
DRR006521Root Winter glycyrrhizin high producing strain22.455
DRR006522Root Winter glycyrrhizin high producing strain21.651
DRR006523Root Summer glycyrrhizin low producing strain17.741
DRR006524Root Summer glycyrrhizin low producing strain18.179
DRR006525Leaf Summer glycyrrhizin high producing strain8.079
DRR006526Leaf Summer glycyrrhizin high producing strain8.005

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)19.030
SRR2868004Drought Stress(Tissue:root)20.510
SRR2967015Control (Tissue:root)23.129

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave11.068
SRR9715740Leave11.360
SRR9715741Leave12.893
SRR9715739Root1.384
SRR9715742Root7.695
SRR9715743Root6.872

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h21.494
SRR8749028MeJA induced 9h21.856
SRR8749029MeJA induced 9h20.954
SRR8749030Uninduced9.832
SRR8749031Uninduced12.481
SRR8749032Uninduced10.201

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.524
SRR8400027Control-Root19.020

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved