Gene detail

Home
Network
Tools
- Search
- Blast
- Motif
- GSEA
- Heatmap Analysis
- JBrowse
Gene family
KEGG
Download
Help

Gene detail information of Glyur000042s00005049.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G14820.1	2.00E-176	Phototropic-responsive NPH3 family protein
NR	XP_004511848.1	0	PREDICTED: BTB/POZ domain-containing protein NPY2-like [Cicer arietinum]
Swissprot	tr\|O80970\|NPY2_ARATH	0	BTB/POZ domain-containing protein NPY2
trEMBL	tr\|G7K3U5\|G7K3U5_MEDTR	0	Phototropic-responsive NPH3 family protein {ECO:0000313\|EMBL:AES94565.1}

Sequence

Transcript Sequence

>Glyur000042s00005049.1
GGCTTTTTGTGTTTGTGTAGCTGTGGTGGCTGTCAAAAGTTGAGGAACAGCTCATCTTTTTGAAGGGTCATCTTTTTTGTTTGGTTGGGTGGTTCCTGTGATATGTGGGGGTGTGACTGTGTTTGTTTCGTTTCTTTGAGGATATAGTGAACTTTGTCGTGCCCACTTCCTTATTTTTGATTCTTTGTACTCACCAGCTGAGCCAGACATGCTATGAACTTTGTGTAGCTTATGCTGCCTTTACTTACTTGTTTTCTTTCCCTCCTCTTGTTATCAATCTACTTTGGTTTCTCAAATACTTGTTCAGAGAACGAGAAGAAACTTCTGGGTCTGGGGGGTGCTTGGCTTCAAAGGAGGGACAGAGCTGAAACATGGCCACCAGTGAATGAATGTTGATTATGGNATTTGGTTTCTGAAAGGGCGTGTTGCTGGTGGTGCTCTTAAACCCGTTGTTGGGAACAACAAACTAAGGAAGGAAAAGAAGCAAATACCCAGATTCAGAAACATAAATTTAATAGTAGTGAGTGGGGCGGTGGTGTCAGTTTTGAGCAAGTGGGGGTGTCTCTTACACTTCCTTTGAGAAATTATTATATATAAATAATATAGTACATGTGTGTGTGAATGTGTGTGTTCGAGATAGTCTGTTTTGTTGGTAATGTCTCCTAACATGGTCATCTTTGCCGGGCTCTNTGGACTTTGTTGCCAATTTAGTAAGCAACATGTTCTTTGAGTCTCTTCTCATTCAAGTCAGAAAAGAATAATAACCCAAAAAAAAAGGTTTTTTTAAAAAAAACTGCAGAGAAAACCCCATTCAACCTTCTCTCTTGGCACTCTAACTGGCCTTGGTTTTTGGGAAAGATTCGGTCATACAAGNATAGAACTTGATCCTTCTATCTTCACCTTGGACTTTACTACCAATTTACTCAGTCACATTCCCCTTTCTTTTAATCCAAACTTCAAGTCGGTGGTTTAGCTTTTCACAGCCGGAGAGACGGTGGAGTTGGTGTTTGGAGCTGTAGTGGAACCTAGGAATTGGATTCCAATAGGGAAAACGGAGCCTTATAGCTTTTTTGTTTGACCACAAGATGAAGTTTATGAAACTTGGATCTAAGCCTGATTCTTTTCAGACTGATGGAGATAATGTCAGGTATGTGGCAACTGAGCTGGCATCTGACATAGTCATTAATGTTGGAGACGTAAAATTTTATCTACATAAGTTTCCACTTTTGTCCAAAAGTTTANGCTTGCAAAAGTTGGTTTCGAACACAAACGAGGAGAACAATGATGAAGTTCATATCCATGACATTCCCGGAGGACCTGTTGCTTTTGAGATATGTGCCAAGTTCTGTTATGGTATGACAGTCACTCTAAATGCATACAATGTGGTTGCAGCTCGCTGTGCAGCAGAGTATCTTGAGATGTATGAAACTGTTGAGAAAGGAAATCTCATCTACAAGATCGAAGTNTTCCTCAACTCCAGCATTTTCAGGAGCTGGAAAGACTCGATTATTGTTCTTCAAACAACCAAGTCTTTTCTTCCATGGTCAGAGGAACTTAAGGTGGTGAGCCATTGCCTGGACTCCATAGCTACCAAGGCTTCAATGGATACATCCAGGGTGGAATGGTCATACACATATAACAGGAAAAAGCTCCCGTCNGAAAATGGGAATGATCCACACTGGAACGGTGTGAGGAAACAACAGATGGTTCCAAATGACTGGTGGGTGGAAGACCTTTGTGAGCTCCAACTTGATCTCTATAAGCGGGTCATGTCAACAATAACAACCAATGGAAATGTTTCTGGGGCTGTAATTGGGGAATCTCTAAGTGCTTATGCCTCTAGAAGGTTGCCTGGCTTCAACAAGGGTGAGATCCAGAGTGGCGATATGACAAAGAATAGATTATTGCTGGAGACCATTGTCAGTCTATTGCCTGCAGATACGGGCAGCGTCTCTTGCAGCTTCTTGCTCAAGTTATTAAAAGCGGCTATTCTATTGGAATGTGAATTGTTGGTGAGATCCGAACTGATGGTGAGAATAGGCCAGTGCCTTGAGGAGGCTACCGTGGCTGATCTTTTGATTTGTGCGCCAGTTGGCGAAACAACAATTTACAGTGTCGATACCGTGCAGAAGCTAGTTGAAGAGTTTGTAGCACACGAACAGCAATCTCAAACCGAATCTCTGTTGGAAGATGAATTGCAGGAGATCAGAAGCCCCAGGATGGTGTCAAATCATTCTAATAAAATGAAGGTAGCAAAACTGGTAGATGGCTACCTTGCTGAGGTTGCACGTGATCCCAATTTGCCTCTTTCAAATTTTGTCAGTATTGCTGAATTGGTGTCAAGCTTTCCTAGAGCATCTCATGATGGCCTTTATCGTGCCATTGACATGTATTTAAAGGAACATCCTGGAATCAGCAAGAGCGAGAGGAAAAGAATATGTAGGTTGATGGACTGCAAGAAGTTATCTGCAGAAGCTTGCATGCATGCGGTGCAGAATGAGCGGCTTCCTTTGCGTGTTGTCGTGCAGGTTCTCTTCTTCGAGCAGCTGAGGGCCACAACATCGTCCGGAGGCAACAGCACGCCGGATCTTCCTGCGTCTATCAGGGCCTTGCATCCCGGTGTCGGATCTCACGGTAGCTCAAGGTCTACCACAACCAACACAGAAGAGGAATGGGATACTGTGGCAACAGCAGAAGACATAAAAGCACTGAAAGGGGAACTCGCCGCACTAAAATTATCAGGTGGAGGTAGTCAGGGCAGCGACAAGAACAGCAACGATGGTGGCAAAGGCAATACTGAAAAGGTTGCTGCTAACAAAATGAAAGGTTTCCTCATGACAAAGAAGATATTCTCTAAGATTTGGTCAGGCAGAGAAAGAAGCGGGGAGATTACAAGCTCTGATACTTCGGAAAGCCCGGCTTCTACAGTTGTAGAGGAGACAAANTCCACACCATCTAGAAGTAGGAGGCATTCAGTATCTTAGAACTTTTNTTTTTTTCAGACATGAAGCACGCTGTGATGCTTGTCTTTGTGTCTGTTTTGCTTCCTATTAGTGGGTGCAAAGCTTGCACGATGCGTAATGTTATTAAAAAAAGTGAAGCACGCACCATTCCACTGTTGTATAATCGTCTCACTGTGGTAGAGCATTAGGAGATAGAGCTTACTTGACATCTTCTGGCTGATTCTTCCATAGAGCTCTGTGGCTTAAACTGTGGAAGGCCATCACTGGTCTTTATCTTTAGATTAGAGATGAGCTCAACGAGGGACCCGGTTTTGTTGTACTATAATATGAGAAAAGGAACATCATTGCCTTGTCTTGGTCTAGGTCCCCACTTATTGGAGTTTGGTCTGTGATAGGCAAAATTTGTTTGTAAGCATTGCAAGACCAGAGAGGTTAACCAACTAGAATCAACTTCTATTAAGTGACTTGGGAAGTTTTTTTCTTTTTGACAAAAAGTGACTTGGAATT

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00042	95934	101681	+

Gene family

Gene family	subfamily
Ubiquitin Family	BTB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0009958 positive gravitropism

molecular_function GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000042s00005049.1	PF00651.26	BTB	28	117	1.20E-07
Glyur000042s00005049.1	PF03000.9	NPH3	210	465	2.00E-92

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	13.407
SRR1783600	control	13.488
SRR1783602	moderate drought stress	14.317
SRR1811619	moderate drought stress	14.343

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	26.274
DRR006520	Root Summer glycyrrhizin high producing strain	26.060
DRR006521	Root Winter glycyrrhizin high producing strain	6.661
DRR006522	Root Winter glycyrrhizin high producing strain	6.453
DRR006523	Root Summer glycyrrhizin low producing strain	31.047
DRR006524	Root Summer glycyrrhizin low producing strain	30.668
DRR006525	Leaf Summer glycyrrhizin high producing strain	28.396
DRR006526	Leaf Summer glycyrrhizin high producing strain	28.244

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	28.486
SRR2868004	Drought Stress(Tissue:root)	25.077
SRR2967015	Control (Tissue:root)	26.610

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	33.378
SRR9715740	Leave	41.714
SRR9715741	Leave	29.805
SRR9715739	Root	9.132
SRR9715742	Root	28.562
SRR9715743	Root	24.150

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	40.782
SRR8749028	MeJA induced 9h	65.733
SRR8749029	MeJA induced 9h	32.185
SRR8749030	Uninduced	49.547
SRR8749031	Uninduced	6.328
SRR8749032	Uninduced	13.924

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	30.154
SRR8400027	Control-Root	29.567