Gene detail information of Glyur000042s00005069.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G67385.1 | 0 | Phototropic-responsive NPH3 family protein |
| NR | XP_003538794.2 | 0 | PREDICTED: BTB/POZ domain-containing protein At5g67385-like isoform X1 [Glycine max] |
| Swissprot | tr|Q66GP0|Y5738_ARATH | 0 | BTB/POZ domain-containing protein At5g67385 |
| trEMBL | tr|I1J9D0|I1J9D0_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G39970.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 198953 | 202730 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | BTB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005069.1 | PF00651.26 | BTB | 97 | 186 | 2.20E-06 |
| Glyur000042s00005069.1 | PF03000.9 | NPH3 | 276 | 515 | 3.30E-82 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.014 |
| SRR1783600 | control | 0.010 |
| SRR1783602 | moderate drought stress | 0.075 |
| SRR1811619 | moderate drought stress | 0.080 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.095 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.053 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.109 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.174 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 22.714 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 22.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.471 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.281 |
| SRR2967015 | Control (Tissue:root) | 0.418 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 26.005 |
| SRR9715740 | Leave | 25.871 |
| SRR9715741 | Leave | 29.199 |
| SRR9715739 | Root | 0.165 |
| SRR9715742 | Root | 0.202 |
| SRR9715743 | Root | 0.221 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 7.025 |
| SRR8749028 | MeJA induced 9h | 5.293 |
| SRR8749029 | MeJA induced 9h | 7.849 |
| SRR8749030 | Uninduced | 8.691 |
| SRR8749031 | Uninduced | 8.880 |
| SRR8749032 | Uninduced | 9.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.051 |
| SRR8400027 | Control-Root | 0.270 |