Gene detail information of Glyur000042s00005098.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G67320.17.00E-179WD-40 repeat family protein
NRXP_004511879.10PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1-like isoform X1 [Cicer arietinum]
COGYP_001865069.16.00E-52hypothetical protein Npun_F1419 [Nostoc punctiforme PCC 73102]
Swissprottr|Q3Y8L7|DAW1_CHLRE2.00E-32Dynein assembly factor with WDR repeat domains 1
trEMBLtr|K7LN56|K7LN56_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G05524.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00042337463346488-


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000042s00005098.1PF08513.6LisH8333.90E-10
Glyur000042s00005098.1PF00400.27WD402032372.60E-12
Glyur000042s00005098.1PF00400.27WD402702961.40E-05
Glyur000042s00005098.1PF00400.27WD403003381.30E-07
Glyur000042s00005098.1PF00400.27WD403854214.90E-11
Glyur000042s00005098.1PF00400.27WD404274728.70E-09
Glyur000042s00005098.1PF00400.27WD404765142.30E-12


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control29.994
SRR1783600control29.910
SRR1783602moderate drought stress42.886
SRR1811619moderate drought stress42.266

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.311
DRR006520Root Summer glycyrrhizin high producing strain30.064
DRR006521Root Winter glycyrrhizin high producing strain54.507
DRR006522Root Winter glycyrrhizin high producing strain53.368
DRR006523Root Summer glycyrrhizin low producing strain26.147
DRR006524Root Summer glycyrrhizin low producing strain25.714
DRR006525Leaf Summer glycyrrhizin high producing strain14.632
DRR006526Leaf Summer glycyrrhizin high producing strain14.736

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)33.260
SRR2868004Drought Stress(Tissue:root)35.150
SRR2967015Control (Tissue:root)39.260

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave19.537
SRR9715740Leave24.278
SRR9715741Leave23.061
SRR9715739Root3.763
SRR9715742Root15.466
SRR9715743Root13.605

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h28.638
SRR8749028MeJA induced 9h36.875
SRR8749029MeJA induced 9h20.115
SRR8749030Uninduced17.754
SRR8749031Uninduced12.326
SRR8749032Uninduced12.117

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root42.048
SRR8400027Control-Root35.802

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved