Gene detail information of Glyur000042s00005109.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G19420.10PTEN 2
NRXP_004511888.10PREDICTED: putative tyrosine-protein phosphatase TPTE-like isoform X1 [Cicer arietinum]
Swissprottr|Q9SK28|FH18_ARATH2.00E-06Formin-like protein 18
trEMBLtr|I1J9A2|I1J9A2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G39650.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00042405232410242-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01110PTEN EC:3.1.3.16 3.1.3.48 3.1.3.67 Inositol phosphate metabolism map00562
FoxO signaling pathwaymap04068
Phosphatidylinositol signaling systemmap04070
Sphingolipid signaling pathwaymap04071
PI3K-Akt signaling pathwaymap04151
mTOR signaling pathwaymap04150
Autophagy - animalmap04140
p53 signaling pathwaymap04115
Focal adhesionmap04510
Longevity regulating pathway - wormmap04212
Pathways in cancermap05200
Central carbon metabolism in cancermap05230
MicroRNAs in cancermap05206
Gliomamap05214
Melanomamap05218
Prostate cancermap05215
Endometrial cancermap05213
Breast cancermap05224
Small cell lung cancermap05222
Insulin resistancemap04931
Hepatitis Bmap05161
EGFR tyrosine kinase inhibitor resistancemap01521


Gene Ontology

biological_process

GO:0006470  protein dephosphorylation

GO:0016311  dephosphorylation


molecular_function

GO:0004725  protein tyrosine phosphatase activity

GO:0008138  protein tyrosine/serine/threonine phosphatase activity

GO:0016791  phosphatase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000042s00005109.1PF00782.15DSPc2482921.30E-05
Glyur000042s00005109.1PF10409.4PTEN_C23264491.60E-10


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.964
SRR1783600control8.279
SRR1783602moderate drought stress1.691
SRR1811619moderate drought stress1.816

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.848
DRR006520Root Summer glycyrrhizin high producing strain7.655
DRR006521Root Winter glycyrrhizin high producing strain42.001
DRR006522Root Winter glycyrrhizin high producing strain40.515
DRR006523Root Summer glycyrrhizin low producing strain2.885
DRR006524Root Summer glycyrrhizin low producing strain2.734
DRR006525Leaf Summer glycyrrhizin high producing strain7.009
DRR006526Leaf Summer glycyrrhizin high producing strain7.031

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)18.829
SRR2868004Drought Stress(Tissue:root)12.740
SRR2967015Control (Tissue:root)19.334

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave0.948
SRR9715740Leave0.089
SRR9715741Leave0.307
SRR9715739Root0.690
SRR9715742Root1.322
SRR9715743Root1.384

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h4.322
SRR8749028MeJA induced 9h5.690
SRR8749029MeJA induced 9h2.910
SRR8749030Uninduced10.677
SRR8749031Uninduced5.887
SRR8749032Uninduced4.274

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root8.486
SRR8400027Control-Root9.522

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved