Gene detail information of Glyur000042s00005112.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G65590.1 | 3.00E-25 | Dof-type zinc finger DNA-binding family protein |
| NR | XP_007156842.1 | 1.44E-115 | hypothetical protein PHAVU_002G022000g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LSL6|DOF57_ARATH | 6.00E-33 | Dof zinc finger protein DOF5.7 |
| trEMBL | tr|V7CIV4|V7CIV4_PHAVU | 5.00E-116 | Uncharacterized protein {ECO:0000313|EMBL:ESW28836.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 435860 | 436936 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-Dof |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005112.1 | PF02701.10 | zf-Dof | 63 | 121 | 1.00E-34 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.040 |
| SRR1783600 | control | 4.196 |
| SRR1783602 | moderate drought stress | 5.579 |
| SRR1811619 | moderate drought stress | 6.009 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.418 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.293 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.451 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.361 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.334 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.055 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.342 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.196 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 26.630 |
| SRR2868004 | Drought Stress(Tissue:root) | 31.841 |
| SRR2967015 | Control (Tissue:root) | 35.703 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.153 |
| SRR9715740 | Leave | 0.361 |
| SRR9715741 | Leave | 0.507 |
| SRR9715739 | Root | 2.405 |
| SRR9715742 | Root | 6.038 |
| SRR9715743 | Root | 5.241 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.067 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.771 |
| SRR8400027 | Control-Root | 7.282 |