Gene detail information of Glyur000042s00005118.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G19080.17.00E-63SWIB complex BAF60b domain-containing protein
NRXP_003517282.10PREDICTED: upstream activation factor subunit spp27-like isoform 1 [Glycine max]
COGYP_003708755.11.00E-17hypothetical protein wcw_0377 [Waddlia chondrophila WSU 86-1044]
Swissprottr|Q9SD34|C3H44_ARATH2.00E-06Zinc finger CCCH domain-containing protein 44
trEMBLtr|I1J943|I1J943_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G39030.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00042457252462764+


Gene family

Gene familysubfamily
Transcription Factors FamilySWI/SNF-BAF60b


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000042s00005118.1PF08766.6DEK_C3552.50E-17
Glyur000042s00005118.1PF02201.13SWIB1272011.00E-30
Glyur000042s00005118.1PF02201.13SWIB2473222.30E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.102
SRR1783600control32.295
SRR1783602moderate drought stress37.181
SRR1811619moderate drought stress36.905

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain46.775
DRR006520Root Summer glycyrrhizin high producing strain46.247
DRR006521Root Winter glycyrrhizin high producing strain36.840
DRR006522Root Winter glycyrrhizin high producing strain35.640
DRR006523Root Summer glycyrrhizin low producing strain57.851
DRR006524Root Summer glycyrrhizin low producing strain56.967
DRR006525Leaf Summer glycyrrhizin high producing strain22.566
DRR006526Leaf Summer glycyrrhizin high producing strain22.710

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)50.653
SRR2868004Drought Stress(Tissue:root)51.673
SRR2967015Control (Tissue:root)53.901

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.238
SRR9715740Leave33.611
SRR9715741Leave37.022
SRR9715739Root6.741
SRR9715742Root24.075
SRR9715743Root19.603

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h66.547
SRR8749028MeJA induced 9h60.712
SRR8749029MeJA induced 9h63.233
SRR8749030Uninduced63.704
SRR8749031Uninduced69.528
SRR8749032Uninduced50.352

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.804
SRR8400027Control-Root43.733

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved