Gene detail information of Glyur000042s00005119.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37180.1 | 7.00E-54 | Homeodomain-like superfamily protein |
| NR | XP_007156835.1 | 3.72E-147 | hypothetical protein PHAVU_002G021400g [Phaseolus vulgaris] |
| Swissprot | tr|Q9LTH4|PCLL_ARATH | 5.00E-15 | Transcription factor BOA |
| trEMBL | tr|V7CFC0|V7CFC0_PHAVU | 1.00E-147 | Uncharacterized protein {ECO:0000313|EMBL:ESW28829.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00042 | 473270 | 475469 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | G2-like |
| EAR motif-containing Proteins | G2-like |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000042s00005119.1 | PF00249.26 | Myb_DNA-binding | 239 | 290 | 9.10E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.855 |
| SRR1783600 | control | 3.005 |
| SRR1783602 | moderate drought stress | 3.291 |
| SRR1811619 | moderate drought stress | 3.212 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.554 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.199 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.560 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.182 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.793 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.078 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.159 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.226 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.816 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.730 |
| SRR2967015 | Control (Tissue:root) | 6.507 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.848 |
| SRR9715740 | Leave | 8.231 |
| SRR9715741 | Leave | 7.702 |
| SRR9715739 | Root | 2.112 |
| SRR9715742 | Root | 12.189 |
| SRR9715743 | Root | 8.033 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 110.992 |
| SRR8749028 | MeJA induced 9h | 159.239 |
| SRR8749029 | MeJA induced 9h | 131.983 |
| SRR8749030 | Uninduced | 15.466 |
| SRR8749031 | Uninduced | 32.198 |
| SRR8749032 | Uninduced | 53.414 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 1.949 |
| SRR8400027 | Control-Root | 0.785 |