Gene detail information of Glyur000043s00003776.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11590.1 | 3.00E-36 | Integrase-type DNA-binding superfamily protein |
| NR | XP_003597699.1 | 2.03E-86 | Ethylene-responsive transcription factor TINY [Medicago truncatula] |
| Swissprot | tr|Q9LYD3|DREB3_ARATH | 3.00E-56 | Dehydration-responsive element-binding protein 3 |
| trEMBL | tr|G7IUM6|G7IUM6_MEDTR | 8.00E-87 | AP2 domain class transcription factor {ECO:0000313|EMBL:AES67950.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00043 | 98828 | 99457 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000043s00003776.1 | PF00847.15 | AP2 | 39 | 90 | 5.60E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 7.171 |
| SRR1783600 | control | 8.415 |
| SRR1783602 | moderate drought stress | 8.952 |
| SRR1811619 | moderate drought stress | 9.054 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.152 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 21.916 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.177 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.142 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 3.331 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 3.513 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.375 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.227 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 1.819 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.689 |
| SRR2967015 | Control (Tissue:root) | 1.880 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.837 |
| SRR9715740 | Leave | 0.283 |
| SRR9715741 | Leave | 1.502 |
| SRR9715739 | Root | 4.485 |
| SRR9715742 | Root | 13.828 |
| SRR9715743 | Root | 7.584 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 9.341 |
| SRR8400027 | Control-Root | 12.286 |