Gene detail information of Glyur000043s00003782.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G16260.10tRNAse Z4
NRKHN32633.10Zinc phosphodiesterase ELAC protein 2 [Glycine soja]
COGYP_007312488.11.00E-27ribonuclease Z [Methanomethylovorans hollandica DSM 15978]
trEMBLtr|I1M5I2|I1M5I2_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G43270.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00043123858128979+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00784rnz EC:3.1.26.11 RNA transport map03013


Gene Ontology

biological_process

GO:0008033  tRNA processing

GO:0042779  tRNA 3'-trailer cleavage


molecular_function

GO:0016891  endoribonuclease activity, producing 5'-phosphomonoesters


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000043s00003782.1PF13691.1Lactamase_B_41211761.40E-16
Glyur000043s00003782.1PF12706.2Lactamase_B_26249203.70E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control11.607
SRR1783600control11.637
SRR1783602moderate drought stress13.484
SRR1811619moderate drought stress13.122

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain14.627
DRR006520Root Summer glycyrrhizin high producing strain14.472
DRR006521Root Winter glycyrrhizin high producing strain10.124
DRR006522Root Winter glycyrrhizin high producing strain9.973
DRR006523Root Summer glycyrrhizin low producing strain18.991
DRR006524Root Summer glycyrrhizin low producing strain19.076
DRR006525Leaf Summer glycyrrhizin high producing strain11.443
DRR006526Leaf Summer glycyrrhizin high producing strain11.541

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.558
SRR2868004Drought Stress(Tissue:root)12.459
SRR2967015Control (Tissue:root)12.845

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave21.401
SRR9715740Leave37.066
SRR9715741Leave24.263
SRR9715739Root8.430
SRR9715742Root15.951
SRR9715743Root14.383

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.268
SRR8749028MeJA induced 9h14.587
SRR8749029MeJA induced 9h8.821
SRR8749030Uninduced5.250
SRR8749031Uninduced2.178
SRR8749032Uninduced3.059

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.854
SRR8400027Control-Root20.563

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved