Gene detail information of Glyur000043s00003784.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G50390.1 | 1.00E-55 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_007150646.1 | 0 | hypothetical protein PHAVU_005G169900g [Phaseolus vulgaris] |
| COG | YP_002463148.1 | 2.00E-19 | NB-ARC domain-containing protein [Chloroflexus aggregans DSM 9485] |
| Swissprot | tr|Q8RXA7|SCD1_ARATH | 3.00E-11 | DENN domain and WD repeat-containing protein SCD1 {ECO:0000305} |
| trEMBL | tr|V7C039|V7C039_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW22640.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00043 | 133573 | 135584 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | DWD |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000043s00003784.1 | PF00400.27 | WD40 | 104 | 130 | 0.012 |
| Glyur000043s00003784.1 | PF00400.27 | WD40 | 207 | 235 | 0.0014 |
| Glyur000043s00003784.1 | PF00400.27 | WD40 | 241 | 276 | 7.30E-06 |
| Glyur000043s00003784.1 | PF00400.27 | WD40 | 338 | 368 | 1.30E-05 |
| Glyur000043s00003784.1 | PF00400.27 | WD40 | 377 | 428 | 1.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.149 |
| SRR1783600 | control | 2.135 |
| SRR1783602 | moderate drought stress | 3.402 |
| SRR1811619 | moderate drought stress | 3.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 3.633 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.521 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.940 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.727 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.713 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.569 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.960 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.942 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.538 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.766 |
| SRR2967015 | Control (Tissue:root) | 3.613 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.308 |
| SRR9715740 | Leave | 0.728 |
| SRR9715741 | Leave | 0.048 |
| SRR9715739 | Root | 2.008 |
| SRR9715742 | Root | 0.806 |
| SRR9715743 | Root | 0.936 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.349 |
| SRR8749028 | MeJA induced 9h | 1.631 |
| SRR8749029 | MeJA induced 9h | 0.770 |
| SRR8749030 | Uninduced | 1.239 |
| SRR8749031 | Uninduced | 0.120 |
| SRR8749032 | Uninduced | 0.229 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 4.412 |
| SRR8400027 | Control-Root | 4.298 |