Gene detail information of Glyur000043s00003788.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G29080.1 | 5.00E-79 | phytochrome-associated protein 2 |
| NR | XP_003597715.1 | 0 | Auxin-responsive protein IAA [Medicago truncatula] |
| Swissprot | tr|Q9ZSY8|IAA27_ARATH | 5.00E-99 | Auxin-responsive protein IAA27 |
| trEMBL | tr|G7IUP2|G7IUP2_MEDTR | 0 | Auxin-induced protein {ECO:0000256|RuleBase:RU004549} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00043 | 147940 | 150636 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | AUX/IAA |
| EAR motif-containing Proteins | AUX/IAA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000043s00003788.1 | PF02309.11 | AUX_IAA | 46 | 340 | 5.70E-84 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.201 |
| SRR1783600 | control | 23.960 |
| SRR1783602 | moderate drought stress | 19.176 |
| SRR1811619 | moderate drought stress | 19.062 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 47.367 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 47.204 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 16.421 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 16.126 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 38.279 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 37.766 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 15.175 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 14.916 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 68.884 |
| SRR2868004 | Drought Stress(Tissue:root) | 90.748 |
| SRR2967015 | Control (Tissue:root) | 77.122 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 65.786 |
| SRR9715740 | Leave | 41.364 |
| SRR9715741 | Leave | 58.452 |
| SRR9715739 | Root | 41.640 |
| SRR9715742 | Root | 85.604 |
| SRR9715743 | Root | 84.592 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 10.379 |
| SRR8749028 | MeJA induced 9h | 5.042 |
| SRR8749029 | MeJA induced 9h | 4.799 |
| SRR8749030 | Uninduced | 2.221 |
| SRR8749031 | Uninduced | 0.429 |
| SRR8749032 | Uninduced | 1.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 83.103 |
| SRR8400027 | Control-Root | 114.689 |