Gene detail

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Gene detail information of Glyur000043s00003818.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G24090.1	3.00E-86	chitinase A
NR	XP_003597766.1	1.78E-146	Acidic endochitinase [Medicago truncatula]
COG	YP_004962456.1	4.00E-07	chitinase A [Streptomyces bingchenggensis BCW-1]
Swissprot	tr\|P51614\|CHIT3_VITVI	4.00E-115	Acidic endochitinase (Precursor)
trEMBL	tr\|G7II36\|G7II36_MEDTR	5.00E-136	Chitinase {ECO:0000313\|EMBL:AES68017.2}

Sequence

Transcript Sequence

>Glyur000043s00003818.1
ATGTCTATAATTAGAATAATACTCCATTCTTCCTCTTTGGTTCTACTCCTTATTANCTTCCTAGTCTTCCTTGTTAATGCAAAAGCAGACAGCATTGCCATTTACTGGGGTCAAAACGAGGACGAGGGGAGCCNAACAGAAACATGTGCAACAGGGAAGTACTCCTATGTAATCATAGCCTTCCTAAACAAATTTGGGAATAGCAAAACCCCTGAAATCAACATGGCTGGTCACTGTGACCCTTCTTCTTCTTCCAAAGGCTGCACTTCGTTAAGCACAGACATCAGGAATTGCCAAGCGCAAGGGATCAAAGTCTTTCTCTCCATCGGAGGAGCTAATGGGGACTACGGTCTCGCTTCCTCCGATGATGCCAAGGATGTCTCTGACTACTTGTGGAACAATTTCTTAGGTGGCACTACCACTGCCACGTCACGCCCACTTGGGGACGCTATATTAGATGGCATTGACTTTGACATAGAGAACTCCACGTGGCANCACTGGGAGGAACTCGCGCGTTTCCTCAAGTCACGTGACACCCCAACCCAAAAAGTTTACTTGAGTGCCGCACCTCAGTGCCCATTCCCTGATCGTGAACTGGGTGTTGCCCTTGACACTAGGGTTTTCGACTATGTTTGGATACAGTTTTACAACAATCCCGAATGCGATTATAGTACCCAGACACGTGTCGATCCCTTGTTGGATTCGTGGAAGCGGTGGACGGCGTCGTTGACNGGAGGGAAAGTGTTTCTGGGGTTGCCGGCATCTCCTGCGGTGGCGGGTAGCGGCTATGTTCCAGCTGATTTGCTGTGTGGGGTTCTTCTTCCTGTCGTAAAGATGTCGCCTAACTNTGGTGGGGTGATGCTGTGGACAACGTACTATGATAAACAAATAAACAAGTGGTGGATATGGCTTATCNTTGGGGCGGGAGCAGCCCTTGCAATCTCTCTTATCTTATACTTAGCTTGTACCTTACGGAGAAAAGCCAAAACACAAGTGGATGGAAAAATCAACCAGAAGAAGCCGTTACATGAATTTGGAGGCAATGCAGTGCTTCCTGACCAAGCAAGAACTATTGAAATAGAGGGAAGGACCAGTAACGAGGCCAAAATGTTCAGTCAAGTTATAGAGCTAGTAGACTCAGCACTAAATGAAACAAGCACTACAAATGAATTGAACTTGTTCAGCCAAAACAGCCAGCATTCTTCACCAATGTGGTTGGGGAAGACTCAGTTGCCTAACAGAAAGTCTGGTGATGACACATTAACGCAAGGAGATTACTTGGAACGGGGAAGAATGACCTCAGCTTCTCAGGAGTACAGCCTAAGAACGTTTTGCAGCTTTGGTAGGCCCTNGATTGCCAACAACAACTTTAAGGCACCGGCAAAGCTAGTAATTGACGACTACGGTAGCTTGAAAGTCTCACACAATAATGACACAGAGTCCGTTGTGTTATATTCAAGCGAAGCTGTTGAAAGGATCAATGTCAGTGCCACTCTGCTTAACACCGGCAACTTTGTGCTGAGCCAGTGGAACAAAGACGGTACTGTGAAACAGATCCTGTGGCAAAGTTTTGATCACCCCACCAACATCCTATTGCCAGGAATGAGGCTGGGATTCAACAGGAAAACGGGGCAGAATTGGACCTTAACATCTCGGACAGGCTCAAACACACGNGCTCCTGGTTCCTTCACTCTTGGGGTGGACCCAAACAACAAGGAGCAATTGGTCATGAGGTGGAAAGACAGCATCTACTGGACCAGTAGGCCGCTTGTTGATAAAAGTTTTCGCAATGTGAACGCAACTTCAGGCGGAAATAACTTCTATTTCAATTACGCTTCAAACGAAAATGAAACATATTTCAGTTTTGATTCCGCATCACTCTGGGATGAACCTGTTTTCATTGGTTTGAATCCCTATGGTCAACTATATGGCAGAGTGTCTGTCTCTTGCAATAGTGACGACCCTGCACTTGTTAGTGGANGTGTGGCTCAGAGGTTCCCAACCTGCAGAAACCAAGATACTTATGTATCCATGACCAACTTTAAGTTTGGTAATATGTCCCAAGAAGGGTACAAGAAGAACGAGGGATTCGATAAGCTTTCTCTTTATGATTGTGGAGTCAAGTGCTTGCATAATTGCTCTTGTTTTGCCTACTCATCCACGACCGCAGATAATACTGGCTGCCAGATATGGGATAAAGGGGCCAAATTTGCCACGTCTTCTGTTGGGCAACCAATTTATTTCCTCCCTGAAAACATCATTAACAGAGAAAAATCTAAAGCTAATGTAAGGAAGTTATGGATCGCTTGTGTGATTGGTGGTGCTCTGCTGATACTCGTATCATCCTTTGTGTTCTATGTATTGTTGAGGAAACGCAGAATGGAAGAACAAGAAAAATTGAAGCAAGAGAAGATATTATATGAGATTGAAGGAATTGCAACACCTTCCCATGTAAACAGCAAACGGANAAGGAGTAATAAAATTGAAACCACAAAGTATGGGATGCACATGTTCAGCTATGAAAGCATTGAATTAGCAACTGATAATTTCTCTTCAGCAAACAAGTTGGGTGAGGGTGGCTTTGGACCTGTCTATAAG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00043	296486	301774	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K01183	E3.2.1.14	EC:3.2.1.14	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

biological_process
GO:0005975 carbohydrate metabolic process

molecular_function GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000043s00003818.1	PF00704.23	Glyco_hydro_18	32	255	2.10E-24
Glyur000043s00003818.1	PF01453.19	B_lectin	460	555	1.10E-17
Glyur000043s00003818.1	PF08276.6	PAN_2	669	732	3.80E-08

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.735
SRR1783600	control	1.882
SRR1783602	moderate drought stress	2.566
SRR1811619	moderate drought stress	2.669

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.926
DRR006520	Root Summer glycyrrhizin high producing strain	3.380
DRR006521	Root Winter glycyrrhizin high producing strain	1.758
DRR006522	Root Winter glycyrrhizin high producing strain	1.658
DRR006523	Root Summer glycyrrhizin low producing strain	2.405
DRR006524	Root Summer glycyrrhizin low producing strain	2.149
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.324
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.153

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.102
SRR2868004	Drought Stress(Tissue:root)	0.877
SRR2967015	Control (Tissue:root)	1.205

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	0.717
SRR9715740	Leave	0.242
SRR9715741	Leave	0.331
SRR9715739	Root	0.442
SRR9715742	Root	0.782
SRR9715743	Root	0.788

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.813
SRR8749028	MeJA induced 9h	2.994
SRR8749029	MeJA induced 9h	1.401
SRR8749030	Uninduced	1.118
SRR8749031	Uninduced	0.207
SRR8749032	Uninduced	0.245

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.778
SRR8400027	Control-Root	5.504