Gene detail information of Glyur000043s00003839.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G52360.10Coatomer, beta' subunit
NRXP_004486718.10PREDICTED: coatomer subunit beta'-2-like isoform X1 [Cicer arietinum]
COGYP_003890644.13.00E-70WD40 repeat-containing protein [Cyanothece sp. PCC 7822]
Swissprottr|Q9C827|COB22_ARATH0Coatomer subunit beta'-2
trEMBLtr|K7M8Y1|K7M8Y1_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA15G01680.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00043405372420923+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006886  intracellular protein transport

GO:0016192  vesicle-mediated transport


cellular_component

GO:0030117  membrane coat


molecular_function

GO:0005198  structural molecule activity

GO:0005515  protein binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000043s00003839.1PF00400.27WD40931291.30E-07
Glyur000043s00003839.1PF00400.27WD401341732.50E-09
Glyur000043s00003839.1PF00400.27WD401822171.00E-05
Glyur000043s00003839.1PF00400.27WD402222598.10E-10
Glyur000043s00003839.1PF00400.27WD403143490.12
Glyur000043s00003839.1PF00400.27WD403974332.90E-09
Glyur000043s00003839.1PF00400.27WD404384772.90E-10
Glyur000043s00003839.1PF00400.27WD404855211.40E-07
Glyur000043s00003839.1PF00400.27WD405265631.70E-13
Glyur000043s00003839.1PF04053.9Coatomer_WDAD6259654.30E-127
Glyur000043s00003839.1PF04053.9Coatomer_WDAD96610454.00E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control22.723
SRR1783600control23.183
SRR1783602moderate drought stress14.879
SRR1811619moderate drought stress14.758

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain33.610
DRR006520Root Summer glycyrrhizin high producing strain33.411
DRR006521Root Winter glycyrrhizin high producing strain26.514
DRR006522Root Winter glycyrrhizin high producing strain25.396
DRR006523Root Summer glycyrrhizin low producing strain27.508
DRR006524Root Summer glycyrrhizin low producing strain27.260
DRR006525Leaf Summer glycyrrhizin high producing strain21.759
DRR006526Leaf Summer glycyrrhizin high producing strain21.358

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)92.058
SRR2868004Drought Stress(Tissue:root)66.769
SRR2967015Control (Tissue:root)57.861

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave23.352
SRR9715740Leave18.836
SRR9715741Leave21.312
SRR9715739Root7.537
SRR9715742Root31.077
SRR9715743Root26.596

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h68.257
SRR8749028MeJA induced 9h133.210
SRR8749029MeJA induced 9h60.052
SRR8749030Uninduced80.584
SRR8749031Uninduced75.960
SRR8749032Uninduced44.550

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root61.475
SRR8400027Control-Root64.074

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved