Gene detail information of Glyur000043s00003842.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G15940.2 | 0 | UDP-Glycosyltransferase superfamily protein |
| NR | KEH39575.1 | 0 | group 1 family glycosyltransferase [Medicago truncatula] |
| COG | YP_006440569.1 | 3.00E-14 | glycosyl transferase group 1 [Turneriella parva DSM 21527] |
| trEMBL | tr|A0A072VN57|A0A072VN57_MEDTR | 0 | Group 1 family glycosyltransferase {ECO:0000313|EMBL:KEH39575.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00043 | 432621 | 436549 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GT4 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000043s00003842.1 | PF00534.15 | Glycos_transf_1 | 585 | 688 | 6.80E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 18.177 |
| SRR1783600 | control | 18.097 |
| SRR1783602 | moderate drought stress | 13.447 |
| SRR1811619 | moderate drought stress | 13.352 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 17.559 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 17.473 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 15.521 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 14.936 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 22.755 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 23.145 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.749 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.838 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 29.420 |
| SRR2868004 | Drought Stress(Tissue:root) | 26.606 |
| SRR2967015 | Control (Tissue:root) | 30.646 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.481 |
| SRR9715740 | Leave | 5.621 |
| SRR9715741 | Leave | 9.398 |
| SRR9715739 | Root | 7.890 |
| SRR9715742 | Root | 30.118 |
| SRR9715743 | Root | 27.885 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.339 |
| SRR8749028 | MeJA induced 9h | 75.915 |
| SRR8749029 | MeJA induced 9h | 36.528 |
| SRR8749030 | Uninduced | 7.529 |
| SRR8749031 | Uninduced | 1.773 |
| SRR8749032 | Uninduced | 3.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 24.641 |
| SRR8400027 | Control-Root | 28.632 |