Gene detail information of Glyur000043s00003843.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80440.1 | 1.00E-103 | Galactose oxidase/kelch repeat superfamily protein |
| NR | XP_007150677.1 | 0 | hypothetical protein PHAVU_005G172400g [Phaseolus vulgaris] |
| COG | YP_006860639.1 | 1.00E-08 | Kelch repeat-containing protein [Candidatus Nitrososphaera gargensis Ga9.2] |
| Swissprot | tr|Q9M8L2|FBK30_ARATH | 5.00E-127 | F-box/kelch-repeat protein At1g80440 |
| trEMBL | tr|V7C1B3|V7C1B3_PHAVU | 0 | Uncharacterized protein {ECO:0000313|EMBL:ESW22671.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00043 | 437944 | 439026 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000043s00003843.1 | PF00646.28 | F-box | 4 | 45 | 3.20E-05 |
| Glyur000043s00003843.1 | PF01344.20 | Kelch_1 | 116 | 155 | 1.20E-07 |
| Glyur000043s00003843.1 | PF01344.20 | Kelch_1 | 165 | 204 | 1.50E-07 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.769 |
| SRR1783600 | control | 27.916 |
| SRR1783602 | moderate drought stress | 83.810 |
| SRR1811619 | moderate drought stress | 82.625 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 64.176 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 62.223 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 370.383 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 360.540 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 39.258 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 40.459 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 55.819 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 55.272 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 59.127 |
| SRR2868004 | Drought Stress(Tissue:root) | 217.028 |
| SRR2967015 | Control (Tissue:root) | 250.545 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 205.542 |
| SRR9715740 | Leave | 102.655 |
| SRR9715741 | Leave | 179.001 |
| SRR9715739 | Root | 263.622 |
| SRR9715742 | Root | 164.155 |
| SRR9715743 | Root | 176.031 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 358.693 |
| SRR8749028 | MeJA induced 9h | 353.304 |
| SRR8749029 | MeJA induced 9h | 419.345 |
| SRR8749030 | Uninduced | 15.342 |
| SRR8749031 | Uninduced | 125.772 |
| SRR8749032 | Uninduced | 233.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 58.333 |
| SRR8400027 | Control-Root | 47.356 |