Gene detail information of Glyur000043s00003848.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G42400.1 | 9.00E-99 | SET domain protein 25 |
| NR | XP_004487927.1 | 0 | PREDICTED: uncharacterized protein LOC101514300 isoform X5 [Cicer arietinum] |
| COG | YP_005376945.1 | 2.00E-22 | SET domain-containing protein [Frateuria aurantia DSM 6220] |
| Swissprot | tr|P0CB22|ATX2_ARATH | 3.00E-35 | Histone-lysine N-methyltransferase ATX2 |
| trEMBL | tr|K7LBW1|K7LBW1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA09G05735.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00043 | 454418 | 461481 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | SET |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000043s00003848.1 | PF02213.11 | GYF | 216 | 264 | 4.80E-07 |
| Glyur000043s00003848.1 | PF00856.23 | SET | 1048 | 1152 | 6.00E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.090 |
| SRR1783600 | control | 2.034 |
| SRR1783602 | moderate drought stress | 2.984 |
| SRR1811619 | moderate drought stress | 3.049 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.659 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.680 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.459 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.307 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.355 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.275 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.578 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.490 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 7.864 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.296 |
| SRR2967015 | Control (Tissue:root) | 8.353 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 4.722 |
| SRR9715740 | Leave | 3.866 |
| SRR9715741 | Leave | 5.019 |
| SRR9715739 | Root | 1.033 |
| SRR9715742 | Root | 5.018 |
| SRR9715743 | Root | 4.409 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 5.084 |
| SRR8749028 | MeJA induced 9h | 9.041 |
| SRR8749029 | MeJA induced 9h | 3.381 |
| SRR8749030 | Uninduced | 2.788 |
| SRR8749031 | Uninduced | 1.903 |
| SRR8749032 | Uninduced | 1.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 8.082 |
| SRR8400027 | Control-Root | 7.335 |