Gene detail information of Glyur000043s00003852.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G44790.10copper-exporting ATPase / responsive-to-antagonist 1 / copper-transporting ATPase (RAN1)
NRAES65139.20heavy metal P-type ATPase [Medicago truncatula]
COGYP_003495561.10heavy-metal transporting P-type ATPase [Deferribacter desulfuricans SSM1]
Swissprottr|Q9S7J8|HMA7_ARATH0Copper-transporting ATPase RAN1
trEMBLtr|G7INF6|G7INF6_MEDTR0Heavy metal P-type ATPase {ECO:0000313|EMBL:AES65139.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00043477980484739+


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K17686copA, ATP7 EC:3.6.3.54 MAPK signaling pathway - plant map04016
Platinum drug resistancemap01524


Gene Ontology

biological_process

GO:0006812  cation transport

GO:0030001  metal ion transport


cellular_component

GO:0016021  integral component of membrane


molecular_function

GO:0000166  nucleotide binding

GO:0005507  copper ion binding

GO:0019829  cation-transporting ATPase activity

GO:0046872  metal ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000043s00003852.1PF00403.21HMA491093.30E-13
Glyur000043s00003852.1PF00403.21HMA1311911.20E-12
Glyur000043s00003852.1PF00122.15E1-E2_ATPase3556002.40E-49
Glyur000043s00003852.1PF00702.21Hydrolase6068406.00E-49


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control5.686
SRR1783600control5.674
SRR1783602moderate drought stress7.651
SRR1811619moderate drought stress7.643

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.835
DRR006520Root Summer glycyrrhizin high producing strain5.547
DRR006521Root Winter glycyrrhizin high producing strain15.187
DRR006522Root Winter glycyrrhizin high producing strain14.668
DRR006523Root Summer glycyrrhizin low producing strain7.622
DRR006524Root Summer glycyrrhizin low producing strain7.756
DRR006525Leaf Summer glycyrrhizin high producing strain4.506
DRR006526Leaf Summer glycyrrhizin high producing strain4.397

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)13.310
SRR2868004Drought Stress(Tissue:root)17.159
SRR2967015Control (Tissue:root)18.667

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave8.778
SRR9715740Leave9.738
SRR9715741Leave12.370
SRR9715739Root4.123
SRR9715742Root14.821
SRR9715743Root12.697

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.656
SRR8749028MeJA induced 9h19.860
SRR8749029MeJA induced 9h12.454
SRR8749030Uninduced11.340
SRR8749031Uninduced6.316
SRR8749032Uninduced9.164

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root15.592
SRR8400027Control-Root12.632

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved