Gene detail information of Glyur000044s00005139.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT3G06350.10dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative
NRAFK48985.10unknown [Medicago truncatula]
COGNP_867287.12.00E-923-dehydroquinate dehydratase / shikimate 5-dehydrogenase precursor [Rhodopirellula baltica SH 1]
Swissprottr|Q9SQT8|DHQSD_ARATH0Shikimate dehydrogenase (Precursor)
trEMBLtr|I3T8Z3|I3T8Z3_MEDTR0Uncharacterized protein {ECO:0000313|EMBL:AFK48985.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000446309870013-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K13832aroDE, DHQ-SDH EC:4.2.1.10 1.1.1.25 Biosynthesis of amino acids map01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400


Gene Ontology

biological_process

GO:0019632  shikimate metabolic process

GO:0055114  oxidation-reduction process


molecular_function

GO:0003824  catalytic activity

GO:0003855  3-dehydroquinate dehydratase activity

GO:0004764  shikimate 3-dehydrogenase (NADP+) activity

GO:0050661  NADP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000044s00005139.1PF01487.10DHquinase_I91759.40E-55
Glyur000044s00005139.1PF01487.10DHquinase_I2042572.20E-13
Glyur000044s00005139.1PF08501.6Shikimate_dh_N2703501.70E-24
Glyur000044s00005139.1PF01488.15Shikimate_DH3884783.80E-13


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control15.902
SRR1783600control15.827
SRR1783602moderate drought stress14.624
SRR1811619moderate drought stress14.518

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.677
DRR006520Root Summer glycyrrhizin high producing strain13.726
DRR006521Root Winter glycyrrhizin high producing strain4.984
DRR006522Root Winter glycyrrhizin high producing strain4.782
DRR006523Root Summer glycyrrhizin low producing strain18.619
DRR006524Root Summer glycyrrhizin low producing strain18.718
DRR006525Leaf Summer glycyrrhizin high producing strain25.116
DRR006526Leaf Summer glycyrrhizin high producing strain24.793

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)52.775
SRR2868004Drought Stress(Tissue:root)52.512
SRR2967015Control (Tissue:root)51.692

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave37.853
SRR9715740Leave32.147
SRR9715741Leave48.837
SRR9715739Root14.016
SRR9715742Root24.808
SRR9715743Root21.456

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h39.303
SRR8749028MeJA induced 9h36.121
SRR8749029MeJA induced 9h28.777
SRR8749030Uninduced43.276
SRR8749031Uninduced51.806
SRR8749032Uninduced27.881

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root46.289
SRR8400027Control-Root35.767

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved