Gene detail

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Gene detail information of Glyur000044s00005146.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G21540.1	1.00E-129	sphingosine kinase 1
NR	KHN00112.1	0	Sphingosine kinase 1 [Glycine soja]
COG	YP_001516029.1	1.00E-64	sphingosine kinase 2 [Acaryochloris marina MBIC11017]
Swissprot	tr\|Q8L7L1\|SPHK1_ARATH	3.00E-166	Sphingosine kinase 1
trEMBL	tr\|I1KQP5\|I1KQP5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA08G06300.1}

Sequence

Transcript Sequence

>Glyur000044s00005146.1
ATGGCTGNTGTGCTGGTGGGAGCAGAGGAAGACTGGTCAGAAACGATGTCGTGTTCAGACCCTTGTCGGAGGAGTCGCACAGGCTCTGGTGCCAGAAGCTTCGTCAATTCATCAATTCTCTCGCAAGTTTTGATTTTGAATGGAACAGGGCGCCCTAAGAGGCTTTTTGTTTTTGTTAATCCATTTGGGGGGAAGAAAGCTGCTACCAATATTTTTCGTGATCAAGTAAAACCTCTTCTAGAAGATGCCCAAGTGCAACTTACAATCCAAGAAACCAAACATCAGCTCCATGCAAAGCAAGTTGTTCAGTCACTTGATTTTTCCAAGTACGATGGGATTGTTTGTGTTAGTGGAGATGGAATTTTGGTTGAGGTTGTGAACGGACTGCTTCAAAGGGAGGACTGGGACACTGCAATAAAGATGCCCCTTGGAGTTGTTCCTGCAGGTACGGGAAATGGCATGGCAAAGTCTCTTCTCGATTCAGTTGGTGATCCTTGTGCAGTAGTTAATGCTGTTCTTGCCATTATACGAGGTCAAAAGCGATCGGTTGATGTGGCCACCATCAGGCAAGGGGAAACAAGATTTTTTAGTATATTAATGCTTGCATGGGGTTTGGTGGCTGATATTGACATGGAGTCTGAAAAGTATCGGTGGATGGGAAGTGCTCGAGTAGATTTTTATGCTCTCACTCGAATCTTCCATTTGAGGCATTACATGGGATGTGTTTATTTTGTGCCTGCACCTGGGTTTGAAGCTCATGGAAATCCCACTAGTTACCCTGGCAATTCTACTAGCAAAGGCAGCAACAGTTATCCAATTGANATGGAACCTGGGAAGTTACAAAGGCTTGGTTGCCAGGGACCTGCAATTAACTTGGAGAATCTGAGTTGGAGGGTTTTAAATGGACCCTTTGTTTCTGTATGGCTTCACAATGTGCCTTGGGGTGCTGAAAACACTAAGGCAGCACCAGATGCAAAGTTCTCAGATGGTTATCTGGATTTGATCATTGTGAAGAATTGCTCAAAATTATCATTACTATCACTGATGTCAGAGTTGGATAATGGGGGCCATGTAAACTCGCCTTATGTCATGTACCTAAAGGTGAAAGCTTTCATCTTGGAACCTGGCCCACGCTTGGGGGACCAAGAGAAGGAAGNGGTCATAGATGTAGATGGTGATTGGTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	97642	100302	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K04718	SPHK	EC:2.7.1.91	Sphingolipid metabolism	map00600
			VEGF signaling pathway	map04370
			Calcium signaling pathway	map04020
			Sphingolipid signaling pathway	map04071
			Fc gamma R-mediated phagocytosis	map04666
			Tuberculosis	map05152

Gene Ontology

molecular_function
GO:0016301 kinase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005146.1	PF00781.19	DAGK_cat	54	185	9.60E-28

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.364
SRR1783600	control	2.146
SRR1783602	moderate drought stress	4.066
SRR1811619	moderate drought stress	4.209

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.945
DRR006520	Root Summer glycyrrhizin high producing strain	2.098
DRR006521	Root Winter glycyrrhizin high producing strain	2.198
DRR006522	Root Winter glycyrrhizin high producing strain	2.013
DRR006523	Root Summer glycyrrhizin low producing strain	0.371
DRR006524	Root Summer glycyrrhizin low producing strain	0.273
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.937
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.984

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	2.184
SRR2868004	Drought Stress(Tissue:root)	4.605
SRR2967015	Control (Tissue:root)	4.450

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	3.951
SRR9715740	Leave	3.315
SRR9715741	Leave	7.900
SRR9715739	Root	0.418
SRR9715742	Root	2.489
SRR9715743	Root	2.497

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	3.140
SRR8749028	MeJA induced 9h	3.073
SRR8749029	MeJA induced 9h	3.315
SRR8749030	Uninduced	1.827
SRR8749031	Uninduced	6.782
SRR8749032	Uninduced	8.044

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	4.304
SRR8400027	Control-Root	4.277