Gene detail information of Glyur000044s00005156.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G21520.13.00E-162Transducin/WD40 repeat-like superfamily protein
NRAES90430.20telomerase cajal body-like protein [Medicago truncatula]
COGYP_001275252.11.00E-21WD-40 repeat-containing protein [Roseiflexus sp. RS-1]
Swissprottr|Q8H0T9|KTNB1_ARATH3.00E-09Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|G7JRT9|G7JRT9_MEDTR0Telomerase cajal body-like protein {ECO:0000313|EMBL:AES90430.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00044139272143878+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0005515  protein binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000044s00005156.1PF00400.27WD4046752.60E-05
Glyur000044s00005156.1PF00400.27WD402412790.00013
Glyur000044s00005156.1PF00400.27WD403013220.062


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control10.434
SRR1783600control10.565
SRR1783602moderate drought stress16.842
SRR1811619moderate drought stress16.693

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.761
DRR006520Root Summer glycyrrhizin high producing strain13.492
DRR006521Root Winter glycyrrhizin high producing strain10.517
DRR006522Root Winter glycyrrhizin high producing strain10.374
DRR006523Root Summer glycyrrhizin low producing strain13.694
DRR006524Root Summer glycyrrhizin low producing strain13.551
DRR006525Leaf Summer glycyrrhizin high producing strain9.582
DRR006526Leaf Summer glycyrrhizin high producing strain9.521

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)17.659
SRR2868004Drought Stress(Tissue:root)16.341
SRR2967015Control (Tissue:root)20.276

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave12.443
SRR9715740Leave13.106
SRR9715741Leave15.877
SRR9715739Root8.867
SRR9715742Root11.462
SRR9715743Root10.136

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h15.723
SRR8749028MeJA induced 9h9.130
SRR8749029MeJA induced 9h10.439
SRR8749030Uninduced2.697
SRR8749031Uninduced0.959
SRR8749032Uninduced1.856

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root23.643
SRR8400027Control-Root24.188

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved