Gene detail information of Glyur000044s00005168.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G62980.1 | 0 | F-box/RNI-like superfamily protein |
| NR | AES90448.2 | 0 | transport inhibitor response 1 protein [Medicago truncatula] |
| Swissprot | tr|Q570C0|TIR1_ARATH | 0 | Protein TRANSPORT INHIBITOR RESPONSE 1 |
| trEMBL | tr|G7JRV7|G7JRV7_MEDTR | 0 | Transport inhibitor response 1 protein {ECO:0000313|EMBL:AES90448.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00044 | 202220 | 207602 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | F-box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000044s00005168.1 | PF12937.2 | F-box-like | 22 | 52 | 1.40E-05 |
| Glyur000044s00005168.1 | PF13516.1 | LRR_6 | 168 | 185 | 0.053 |
| Glyur000044s00005168.1 | PF13516.1 | LRR_6 | 301 | 319 | 1.9 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 12.743 |
| SRR1783600 | control | 12.629 |
| SRR1783602 | moderate drought stress | 21.683 |
| SRR1811619 | moderate drought stress | 21.518 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 18.284 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 18.217 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 20.563 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 20.044 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 21.794 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 21.760 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 25.236 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 25.011 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 40.690 |
| SRR2868004 | Drought Stress(Tissue:root) | 46.295 |
| SRR2967015 | Control (Tissue:root) | 61.899 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 38.755 |
| SRR9715740 | Leave | 55.744 |
| SRR9715741 | Leave | 38.519 |
| SRR9715739 | Root | 3.704 |
| SRR9715742 | Root | 21.061 |
| SRR9715743 | Root | 18.639 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 15.781 |
| SRR8749028 | MeJA induced 9h | 17.096 |
| SRR8749029 | MeJA induced 9h | 12.859 |
| SRR8749030 | Uninduced | 17.636 |
| SRR8749031 | Uninduced | 6.691 |
| SRR8749032 | Uninduced | 8.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 27.107 |
| SRR8400027 | Control-Root | 29.239 |