Gene detail information of Glyur000044s00005184.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13130.1 | 3.00E-119 | Cellulase (glycosyl hydrolase family 5) protein |
| NR | XP_003608279.1 | 0 | Endoglucanase [Medicago truncatula] |
| COG | YP_003952726.1 | 1.00E-31 | cellulase [Stigmatella aurantiaca DW4/3-1] |
| trEMBL | tr|Q2HTU0|Q2HTU0_MEDTR | 0 | Hydrolyzing O-glycosyl compounds hydrolase {ECO:0000313|EMBL:AES90476.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00044 | 311430 | 313925 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GH5 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01179 | E3.2.1.4 | EC:3.2.1.4 | Starch and sucrose metabolism | map00500 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000044s00005184.1 | PF00150.13 | Cellulase | 69 | 351 | 1.80E-28 |
| Glyur000044s00005184.1 | PF00652.17 | Ricin_B_lectin | 411 | 511 | 0.00016 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.023 |
| SRR1783600 | control | 0.023 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.068 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.067 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.230 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.244 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.034 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.016 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.737 |
| SRR9715740 | Leave | 0.229 |
| SRR9715741 | Leave | 0.162 |
| SRR9715739 | Root | 0.153 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.038 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.088 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.079 |
| SRR8749031 | Uninduced | 0.095 |
| SRR8749032 | Uninduced | 0.119 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.011 |
| SRR8400027 | Control-Root | 0.011 |