Gene detail

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Gene detail information of Glyur000044s00005187.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11340.1	0	S-locus lectin protein kinase family protein
NR	XP_003532567.1	0	PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g11410-like [Glycine max]
COG	YP_001958461.1	2.00E-20	hypothetical protein Aasi_1443 [Candidatus Amoebophilus asiaticus 5a2]
Swissprot	tr\|Q9ZT07\|RKS1_ARATH	0	G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 (Precursor)
trEMBL	tr\|I1KQR8\|I1KQR8_SOYBN	0	Serine/threonine-protein kinase {ECO:0000256\|PIRNR:PIRNR000641}

Sequence

Transcript Sequence

>Glyur000044s00005187.1
ATGAAGATCTTTTCCGCCAAAGAGTTTCTGAGTCCATTGCTTCTGCTGTTGTTCCTCTACCCTTCATGCCACTCACTAGACACCATAACCGTAAACAACCCCATGAGAGACGGCGACGTTTTGGTCTCCAACGACAGAGGAACCTTTGCCCTCGACACTCCCCTGAACGACACTTCCGGTGTTCTCTCCATCAACCACGGAAACCTCGTACTCCACCGCCACAGCAGCCCAATTAACCTTAATAACCCCATTTGGTCTTCAAACATTTCTACCTCCTCCTCTGCCAATGCTTCCGCTAAGCTTTTGGACACTGGAAACCTGGTTTTGACCCAAAGCGGAAGCGTTCTGTGGCAGAGTTTTGATCATCCCAGTAACACTCTGCTTCCGGCCATGAAGCTCGGGTTGGACCGCAAAACCGGTTTGAACCGGTTCCTCACATCCTGGAAGTCCCCGAACGACCCTGGATCGGGGAACTTGACGTTCAGGATCGACCCGACCGGGATTCCCCAGCTGTTTCTGTACAAGAATAAAGCCTCACTGTGGAGGGTCGGGTCGTGGACGGGTCAGAGATGGAGCGGGGTACCCGAAATGACCCCGAACTTCATCTTCAACGTTCGCTTCGTGGACGATGCAGATGAAGTTTCCATAATGATGGTGCTGGATGAGACGGGTCACGTGAGGAGGCTCACGTGGCAAGCACACGAGCAAAGGTGGTTCCAGATCTGGTTTGATCCGAAGGAGGAATGTGACAACTTCAGACAGTGCGGGTCGAACGCCAACTGTGACCCGTATAACGAGGTGAAGTTTCAGTGCGAGTGTTTGCCCGGGTTCGAACCCAAGTTCGGGCGAGCGTGGGATCTCAGAGACGGGTCGGGTGGGTGCGTGAGGAAGCGCAACGTGTCCACGTGTCGAAGCGGGGAGGGGTTTGTGAAGGTTGCACGTGTGAAGGTGCCGGATACGTCAAAGGCACGTGTGAATGTGAGTCTCAGCGTGAGAGAGTGCAGGGAGAAATGCCTGGGGGATTGTTCGTGTGCGGCGTATACGAGTGCCAACGAGAGCTCCCAGAGTGGGTGTGTTACTTGGCATGGTGACATGGAGGACACAAGAACCTTCACACAAGTAGGACAGGATATGTATGTACGTGTGGATGCGCTCGAGCTGGCTAAATATGCAAAACATCCGTATGGTTCTCTTGGCAGGAAGGGAGTGGTGGCAATTTTAGCCATTGCTAGTTGCTTGTTATTGTTTTTTGCAATTATCTTCGTGTATTGGTTTGGCTCTCCCAATGAACAAGACTTCGACATTGATGCAACAGACAATTTCTCAGCTAGTAACAAGCTTGGTCAAGGTGGTTTTGGTTCTGTTTACAAGGGTATACTGGGTAACGGAACGGCAATTGCGGTGAAGAGACTGTCAAAGTATTCTGGACAAGGCATAGAAGAGTTTAAAAATGAGGTTGTTTTGATTTCAAAACTCCAACACAGAAATCTTGTGAGGATCTTAGGTTGCTGCATTCAAGGAGAAGAGAAGATGTTAATCTATGAGTACTTGCCTAACAAAAGCTTGGACTCTTTTATTTTTGATGAATCTAAAAGGTCAGAGCTAGACTGGAGAAAGCGATTTGATATCATTTGTGGAGTTGCTAGAGGAATCTTATACCTTCATCAAGACTCACGATTAAGAATTATTCATAGAGACCTAAAGGCTAGCAATGTCTTGTTGGACGCTACTTTGAACCCAAAAATTGCTGATTTTGGTATGGCTAGAATATTTGTTTTGCTGTTAGAGATTGTTACAGGCAAAAAGAACAGTGGTCAACATGATGACATTATGTCCACAAGTTTAGTTGGACATATATGGGATCTATGGAGAGAAGGCAAAGCCATGGAGGTTGTTGACAAATCATTATTAGGAGAGTCGCCATCTATGTCAGTCGTTGTTGCTATGTTGGGTAGTGACTCAACTCTTCCTACTCCAAAACAGCCAGCGTTTATTTTCAAGAGAACTAATTATGAGAGTTCAAATCCATCAACTAGTGAAGGAATTTATTCAGTAAATGAGGTAAGTATGAGTATGATTGAAGCTCGCTAA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	331419	335262	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.7.2

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0048544 recognition of pollen

molecular_function GO:0004672 protein kinase activity GO:0004674 protein serine/threonine kinase activity GO:0005515 protein binding GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005187.1	PF01453.19	B_lectin	52	154	1.30E-27
Glyur000044s00005187.1	PF00954.15	S_locus_glycop	181	280	3.40E-21
Glyur000044s00005187.1	PF08276.6	PAN_2	303	367	3.50E-19
Glyur000044s00005187.1	PF07714.12	Pkinase_Tyr	443	590	1.10E-32
Glyur000044s00005187.1	PF11883.3	DUF3403	654	696	4.70E-09

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.095
SRR1783600	control	0.069
SRR1783602	moderate drought stress	0.125
SRR1811619	moderate drought stress	0.107

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.051
DRR006520	Root Summer glycyrrhizin high producing strain	0.051
DRR006521	Root Winter glycyrrhizin high producing strain	0.059
DRR006522	Root Winter glycyrrhizin high producing strain	0.127
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	5.192
DRR006526	Leaf Summer glycyrrhizin high producing strain	5.113

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	0.357
SRR2868004	Drought Stress(Tissue:root)	0.344
SRR2967015	Control (Tissue:root)	0.264

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	5.101
SRR9715740	Leave	3.907
SRR9715741	Leave	3.256
SRR9715739	Root	0.070
SRR9715742	Root	0.149
SRR9715743	Root	0.147

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.113
SRR8749028	MeJA induced 9h	0.010
SRR8749029	MeJA induced 9h	0.112
SRR8749030	Uninduced	0.149
SRR8749031	Uninduced	0.495
SRR8749032	Uninduced	0.252

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	0.230
SRR8400027	Control-Root	0.259