Gene detail information of Glyur000044s00005190.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21350.1 | 8.00E-94 | plant U-box 8 |
| NR | XP_004504954.1 | 0 | PREDICTED: U-box domain-containing protein 8-like [Cicer arietinum] |
| COG | YP_001957951.1 | 7.00E-09 | hypothetical protein Aasi_0851 [Candidatus Amoebophilus asiaticus 5a2] |
| Swissprot | tr|O81902|PUB8_ARATH | 6.00E-131 | U-box domain-containing protein 8 |
| trEMBL | tr|A0A072UQ17|A0A072UQ17_MEDTR | 0 | Plant U-box protein {ECO:0000313|EMBL:KEH31163.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00044 | 345846 | 346910 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | U_box |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000044s00005190.1 | PF04564.10 | U-box | 1 | 55 | 1.10E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.668 |
| SRR1783600 | control | 5.895 |
| SRR1783602 | moderate drought stress | 8.906 |
| SRR1811619 | moderate drought stress | 8.581 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 7.926 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 7.415 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.016 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.421 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 6.319 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 6.751 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.100 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 3.295 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.269 |
| SRR2868004 | Drought Stress(Tissue:root) | 10.178 |
| SRR2967015 | Control (Tissue:root) | 7.784 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 10.277 |
| SRR9715740 | Leave | 5.468 |
| SRR9715741 | Leave | 9.750 |
| SRR9715739 | Root | 23.356 |
| SRR9715742 | Root | 17.718 |
| SRR9715743 | Root | 18.546 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 6.583 |
| SRR8749028 | MeJA induced 9h | 6.236 |
| SRR8749029 | MeJA induced 9h | 6.194 |
| SRR8749030 | Uninduced | 4.358 |
| SRR8749031 | Uninduced | 4.600 |
| SRR8749032 | Uninduced | 2.667 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 12.563 |
| SRR8400027 | Control-Root | 10.568 |