Gene detail

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Gene detail information of Glyur000044s00005204.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G54590.2	4.00E-126	Protein kinase superfamily protein
NR	XP_004504900.1	0	PREDICTED: probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730-like [Cicer arietinum]
COG	YP_004493340.1	8.00E-25	protein kinase [Amycolicicoccus subflavus DQS3-9A1]
Swissprot	tr\|Q9LFV3\|Y5157_ARATH	4.00E-95	Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730
trEMBL	tr\|A0A072UN02\|A0A072UN02_MEDTR	0	Dual-specificity kinase domain protein {ECO:0000313\|EMBL:KEH31179.1}

Sequence

Transcript Sequence

>Glyur000044s00005204.1
ATGCACGAGTCTCTCTTTNCAAGGATTGGTGCCTCGTGGCAGCCTAGTGGAATGGATCTCGTCAAGGTATATGTGCAGACTTTGAAGTANTTAGAATATATTCTCAATTTGCACGAGATGAGCAGGACTGCCTTGATTTTGGTAATAGGAATTTGTATAGGCTTTGTGGTTGGAGCGGGTTTGGCATTTTCAATTCTATTATGCTTCAGGTGCAGAAGGAAGTGTACAAAGGTGGAGAAGAGCAGTTCTATGAGAACAGTGGCCATTCCAGTTCATGTCAAAGGGGTTGATTCCAGCACAACATTATCAGAATCTAATGTAGCTCTGGAGTCACCTAGAACATCTGAATGGAGTAACACACCATTATGGTTGGAAGGACTTAGGAGGAAGAATGTAGTTTCAGCATGTGGAATTCCCAAGTATTCTTACAAAGATGTACAAAAGGCTACTTCTAATTTCACAGCGATCATAGGGCATGGAGCATTTGGTCCTGTTTACAAAGCACAGATGTCTACAGGTGAGACAGTTGCAGTTAAAGTTCTTGATACTAATTCAAGACAAGGAGAACAGGAATTTTTAACTGAGGTCCTATTACTTGGAAGATTACATCACAAAAACCTTGTGGGTTTGGTGGGATATGCTGCAGAAAGAGGACAGCATATGCTCCTTTACATTTACATGAGCAACGGCAGTCTTGCTTCTCATTTGTATGGCAAAAACCATGAGCCATTGAGCTGGGATTTGAGACTTAGCATAGCACTAGATGTTGCAAGGGGGCTGGAATATCTGCATTATGGGGCTGCTCCACCTGTTGTACACCGTGACATCAAGTCTTCCAACATACTGCTGAACCAGTTTATGAGAGCCAAGGTCACTGACTTTGGGCTTTCCAGACCAGAGATGATCAAACCTCGTACGTCAAATGTCAGTGGAACTTTTGGATATCTTGATCCTGAGTATATGTCTACAAGAACCTTCACTAAGAAAAGTGATGTTTATAGTTTTGGTGTGCTACTGTTTGAGCTTATTACTGGCAGGAATCCACAGCAGGGACTCATGGAATATGTAAAACTAGTAAGAACAATGTCTGCATGTGGGCTTCTATGAGTGTGCTTTTGCTGGTGTGCTTACATATTCTTTGGTGCATTTGAAAATAAATATTAGTATATAACCTTTATGTAACACATGCATGATTTGTTATACATGTGTTTGTAATATCAACCATTGATTTATTCATTAATGGCTGAGATTGTTTAATTTACACTCTAAAGTGAGCTACTCACTGACTCACTTTAGAGGAGCCAGATCTTATGTTTTGGGATTCACACAGTATNTCTTTCTCGTTATGATTAGGCAGCCATGGAAAGTGAGGGCAAGGTTGGATGGGAAGAAATTGTGGATTCGCAACTGAATGGAAACTATGATGTGCACAAGCTTAATGGCATGGCTTCACTTGCATTCAAATGTGTCAATGGAGTTTCCAAATTCCGACCTTCAATGAGGGACGTTGTTCAAGCATTGTCTCAGCTTTATAAGAAGCATAGTAGAAATTCTAGCCGAACATCTCCTGCTGCATCAAAGAAAGTGTCCATTGAAGTAGATCAGCTAAAAACTCATGACTTTTCATCAATTGAGTGTTCAAAGGTGCTGCGTAGACTACATAGCCGATAATCATTGGAGTCTGCCATTGTTCTTGGACGTGTAAATATCCACTTTTAATTTTGTTTACTTGGTTAACGATTTAACTTCTTTACCTTGCTGGAATTATAAAGTATGTGTTTCATGCATATCAAGTCTTCAATTTTTCGGTTCAGATTCAAAGATCTCTATGGCTTGACTTGGCAGGTTTGATCATTGAAGCTCATATTATCTGTGCTTGTAGTTAAAAAGCGTGGACATAAGATTTGAACAGTAAGCATAATCGAATCCAAACTTGACAGTAGATTGATTGTGCTCTCCTTTCTATCCTTTTAATAAAGTGGCGATATCAATATATCATAGCATGTACCAGAGAGATTTAATGAGGTGGTAATACACTGGGGGATTGACAGAGATGAACCTATTGTTCCCTCCATCTATACTTATTATTCACTTAACATGTCACACTGAACTTCGCAATTACATAAGCGTGAAATTTGCTAGAGCATTGACATGATCAGAATTTAGTTCTTGAGGGCCCCCTTAGTCTTCAAGTACTCCACAGTCTGGTCATAGATTTCTTCAATCCCATACTTGAAACTGAACCCTTCTTTGATAAGCTTCTCAGAAGAGATTATTATCTTTGCCTTGGAGGGGATATCATCAAATCTGCAATTACAAAATGACACTTGCCTTAATACAAATCAAGACATGCATGTTTCAACTGTGAGAAATTG

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00044	431904	438268	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.3.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function GO:0004672 protein kinase activity GO:0005524 ATP binding GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000044s00005204.1	PF07714.12	Pkinase_Tyr	154	354	9.50E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.551
SRR1783600	control	0.574
SRR1783602	moderate drought stress	0.321
SRR1811619	moderate drought stress	0.299

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	1.550
DRR006520	Root Summer glycyrrhizin high producing strain	1.374
DRR006521	Root Winter glycyrrhizin high producing strain	2.650
DRR006522	Root Winter glycyrrhizin high producing strain	2.643
DRR006523	Root Summer glycyrrhizin low producing strain	0.810
DRR006524	Root Summer glycyrrhizin low producing strain	0.839
DRR006525	Leaf Summer glycyrrhizin high producing strain	34.426
DRR006526	Leaf Summer glycyrrhizin high producing strain	33.626

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	1.470
SRR2868004	Drought Stress(Tissue:root)	0.771
SRR2967015	Control (Tissue:root)	1.157

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	17.333
SRR9715740	Leave	1.794
SRR9715741	Leave	4.505
SRR9715739	Root	0.585
SRR9715742	Root	0.052
SRR9715743	Root	0.026

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.510
SRR8749028	MeJA induced 9h	0.984
SRR8749029	MeJA induced 9h	2.041
SRR8749030	Uninduced	0.179
SRR8749031	Uninduced	0.037
SRR8749032	Uninduced	0.199

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	3.308
SRR8400027	Control-Root	2.717