Gene detail information of Glyur000045s00009941.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G21200.1 | 5.00E-37 | gibberellin 2-oxidase 8 |
| NR | XP_003596636.1 | 1.49E-100 | Gibberellin 2-beta-dioxygenase [Medicago truncatula] |
| COG | NP_947703.1 | 2.00E-06 | 2OG-Fe(II) oxygenase [Rhodopseudomonas palustris CGA009] |
| Swissprot | tr|O49561|G2OX8_ARATH | 1.00E-42 | Gibberellin 2-beta-dioxygenase 8 |
| trEMBL | tr|G7IJL7|G7IJL7_MEDTR | 6.00E-101 | Gibberellin 2-beta-dioxygenase {ECO:0000313|EMBL:AES66887.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00045 | 7707 | 10794 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K04125 | E1.14.11.13 | EC:1.14.11.13 | Diterpenoid biosynthesis | map00904 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000045s00009941.1 | PF14226.1 | DIOX_N | 46 | 145 | 1.30E-16 |
| Glyur000045s00009941.1 | PF03171.15 | 2OG-FeII_Oxy | 199 | 230 | 0.00011 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.132 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.132 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.430 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 0.000 |
| SRR2868004 | Drought Stress(Tissue:root) | 0.000 |
| SRR2967015 | Control (Tissue:root) | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.132 |
| SRR9715740 | Leave | 0.646 |
| SRR9715741 | Leave | 0.376 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 1.017 |
| SRR9715743 | Root | 1.153 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 0.023 |
| SRR8400027 | Control-Root | 0.029 |