Gene detail information of Glyur000045s00009950.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54680.1 | 1.00E-59 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
| NR | XP_004505433.1 | 3.06E-137 | PREDICTED: transcription factor ILR3-like [Cicer arietinum] |
| Swissprot | tr|Q9FH37|ILR3_ARATH | 2.00E-115 | Transcription factor ILR3 |
| trEMBL | tr|B7FHX6|B7FHX6_MEDTR | 5.00E-136 | Uncharacterized protein {ECO:0000313|EMBL:AFK47306.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00045 | 75382 | 78046 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | bHLH |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000045s00009950.1 | PF00010.21 | HLH | 77 | 124 | 1.90E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 75.088 |
| SRR1783600 | control | 75.299 |
| SRR1783602 | moderate drought stress | 75.313 |
| SRR1811619 | moderate drought stress | 75.607 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 59.284 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 58.756 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 25.799 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 25.064 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 78.036 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 78.409 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 52.492 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 51.983 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 74.179 |
| SRR2868004 | Drought Stress(Tissue:root) | 90.275 |
| SRR2967015 | Control (Tissue:root) | 108.235 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 77.731 |
| SRR9715740 | Leave | 89.130 |
| SRR9715741 | Leave | 95.984 |
| SRR9715739 | Root | 72.077 |
| SRR9715742 | Root | 63.483 |
| SRR9715743 | Root | 63.567 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 37.641 |
| SRR8749028 | MeJA induced 9h | 40.867 |
| SRR8749029 | MeJA induced 9h | 29.172 |
| SRR8749030 | Uninduced | 32.541 |
| SRR8749031 | Uninduced | 16.097 |
| SRR8749032 | Uninduced | 30.389 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 90.747 |
| SRR8400027 | Control-Root | 92.644 |