Gene detail information of Glyur000046s00004828.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G61140.30SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related
NRXP_004485743.10PREDICTED: DNA repair protein RAD5-like [Cicer arietinum]
COGYP_003266234.19.00E-37SNF2-like protein [Haliangium ochraceum DSM 14365]
Swissprottr|Q9FNI6|SM3L2_ARATH2.00E-99Putative SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 3-like 2
trEMBLtr|G7INY7|G7INY7_MEDTR0SNF2, helicase and zinc finger protein {ECO:0000313|EMBL:AES63749.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00046274341283456-


Gene family

Gene familysubfamily
Transcription Factors FamilySNF2
Ubiquitin FamilyRING


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

molecular_function

GO:0003677  DNA binding

GO:0005515  protein binding

GO:0005524  ATP binding

GO:0008270  zinc ion binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000046s00004828.1PF00176.18SNF2_N5479441.40E-73
Glyur000046s00004828.1PF13923.1zf-C3HC4_298210192.90E-06
Glyur000046s00004828.1PF00271.26Helicase_C115912367.30E-11


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.162
SRR1783600control6.191
SRR1783602moderate drought stress5.857
SRR1811619moderate drought stress5.746

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain13.372
DRR006520Root Summer glycyrrhizin high producing strain13.019
DRR006521Root Winter glycyrrhizin high producing strain7.252
DRR006522Root Winter glycyrrhizin high producing strain6.848
DRR006523Root Summer glycyrrhizin low producing strain19.953
DRR006524Root Summer glycyrrhizin low producing strain19.758
DRR006525Leaf Summer glycyrrhizin high producing strain8.572
DRR006526Leaf Summer glycyrrhizin high producing strain8.673

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)24.710
SRR2868004Drought Stress(Tissue:root)34.652
SRR2967015Control (Tissue:root)25.571

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave32.540
SRR9715740Leave27.466
SRR9715741Leave44.876
SRR9715739Root5.116
SRR9715742Root29.789
SRR9715743Root27.172

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h24.660
SRR8749028MeJA induced 9h33.280
SRR8749029MeJA induced 9h25.613
SRR8749030Uninduced21.800
SRR8749031Uninduced26.997
SRR8749032Uninduced18.250

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.188
SRR8400027Control-Root21.651

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved