Gene detail information of Glyur000046s00004837.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G61210.10Transducin/WD40 repeat-like superfamily protein
NRKEH36528.10katanin p80 WD40 repeat subunit B1-like protein [Medicago truncatula]
COGYP_001275252.11.00E-41WD-40 repeat-containing protein [Roseiflexus sp. RS-1]
Swissprottr|Q8H0T9|KTNB1_ARATH1.00E-159Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022}
trEMBLtr|A0A072V5A1|A0A072V5A1_MEDTR0Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000256|HAMAP-Rule:MF_03022}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00046331264340757+


Gene family

Gene familysubfamily
Ubiquitin FamilyDWD


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0051013  microtubule severing


cellular_component

GO:0008352  katanin complex


molecular_function

GO:0005515  protein binding

GO:0008017  microtubule binding

"

Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000046s00004837.1PF00400.27WD408436.50E-05
Glyur000046s00004837.1PF00400.27WD4050866.10E-05
Glyur000046s00004837.1PF00400.27WD40921283.90E-09
Glyur000046s00004837.1PF00400.27WD401341701.00E-10
Glyur000046s00004837.1PF00400.27WD401742122.60E-09
Glyur000046s00004837.1PF00400.27WD402282480.013


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control12.169
SRR1783600control9.689
SRR1783602moderate drought stress13.492
SRR1811619moderate drought stress13.165

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain12.121
DRR006520Root Summer glycyrrhizin high producing strain9.747
DRR006521Root Winter glycyrrhizin high producing strain13.908
DRR006522Root Winter glycyrrhizin high producing strain14.493
DRR006523Root Summer glycyrrhizin low producing strain10.262
DRR006524Root Summer glycyrrhizin low producing strain8.265
DRR006525Leaf Summer glycyrrhizin high producing strain13.531
DRR006526Leaf Summer glycyrrhizin high producing strain10.862

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)22.239
SRR2868004Drought Stress(Tissue:root)17.946
SRR2967015Control (Tissue:root)25.144

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave20.240
SRR9715740Leave22.256
SRR9715741Leave22.269
SRR9715739Root3.040
SRR9715742Root12.209
SRR9715743Root9.076

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.916
SRR8749028MeJA induced 9h19.870
SRR8749029MeJA induced 9h8.177
SRR8749030Uninduced9.234
SRR8749031Uninduced9.876
SRR8749032Uninduced5.917

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root18.513
SRR8400027Control-Root23.260

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved