Gene detail

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Gene detail information of Glyur000046s00004842.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G11170.1	4.00E-134	Protein of unknown function (DUF707)
NR	XP_003593478.1	0	Lysine ketoglutarate reductase trans-splicing-like protein [Medicago truncatula]
trEMBL	tr\|G7ILG9\|G7ILG9_MEDTR	0	Lysine ketoglutarate reductase trans-splicing-like protein {ECO:0000313\|EMBL:AES63729.1}

Sequence

Transcript Sequence

>Glyur000046s00004842.1
ATGACGTCCACCAAATCATGGAGATGGCTGATGAGAAAAAAGAGTGGCTTGTCTGATGGGGGGAAATCAAGTTTCAAGATGAAACAGCTGCCTTTTATGGCAGTTGTGTGTATAGTAATGNTGTTCATTGTATATAGAACTACAAAGTATCAGTATCACCAAGAAGAGATTGACAAAAAATGGAGTTTCTGGGGAGAAGCAAAGGCATATCCTGCAACATCTGGGAAGTTGAAAGGCTTGCCACGAGGTATAATACATGCTAATTCAGATTTGGAGTTAAGNCCATTGTGGTTGAGAAGTAATTCGAGGTCAAAGGCTAATGTTTATTCCAATCGTAACTTGCTGGCAGTTCCAGTTGGTATTAAACAAAAGCATAATGTCAATGCCATGGTGCAAAAGTTTCTTCCAGCAAATTTTACAATTATTTTATTCCATTATGATGGGAATGTGGATGGATGGTGGAATCTTGACTGGAGTAGCAAGGCTATACACATTGTTGCTCAGAATCAGACAAAGTGGTGGTTTGCAAAAAGATTTCTGCATCCGGATATAGTTTCTATTTATGATTATATCTTTCTCTGGGATGAGGATTTAGGGGTGGAGCATTTTTCTCCCTCAAGATACGTNAAAATTGTGAAGGAAGAAGGTTTGGAGATATCCCAACCAGCTCTTGACCCAAATTCAACAGAGATACATCACAGAATTACTATTAGAGCTAGAAACAAGAAAGTTCATAGAAGAGTCTATGAACGCCGGGGAAGTACAAAGTGTTCAGATGCAAGTGAAGGGCCACCATGCACTGGGTTTGTGGAAGGTATGGCCCCGGTTTTCTCTCGATCTGCCTGGTATTGTACATGGCATCTCATACAGAATGACCTTGTCCATGGATGGGGAATGGATATGAAACTAGGATATTGTGCACAGGGTGATCGAACTAAAAATGTGGGAGTGGTTGATACTGAATACGTTGTTCACAAGGGAATACAAACTCTGGGTGGGAGCGGTCATGATGGTACAACAAAGTTATCAAAACTTAAAAAGACAACTACGGTGCGAAACAAGGTGGAGGAGCAGCAATTGATGTGCGAAGTGAGATACGAAGGCAATCAACGTGGGAACTTGAAATCTTCAAAGAGCGGTGGAATGAAGCCATTGCTGAGGACAAAAATTGGGTTGATCCATTTAAGAGTAAGACTGACCGAAGACGCATGCGAAGATGGCGCGGAACTCACTAACTCGGTTCGGTTGTGGGGTCATGCCGAGAATTTTCGTCATGGTGTATTAATGAAAGATTATCGGTTCGAATTGAACATTGAACTCAGGCATTGA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00046	356216	360502	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GTnc

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000046s00004842.1	PF05212.7	DUF707	79	367	8.50E-119

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	21.442
SRR1783600	control	21.597
SRR1783602	moderate drought stress	16.997
SRR1811619	moderate drought stress	17.000

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.421
DRR006520	Root Summer glycyrrhizin high producing strain	27.018
DRR006521	Root Winter glycyrrhizin high producing strain	43.233
DRR006522	Root Winter glycyrrhizin high producing strain	42.255
DRR006523	Root Summer glycyrrhizin low producing strain	42.094
DRR006524	Root Summer glycyrrhizin low producing strain	41.549
DRR006525	Leaf Summer glycyrrhizin high producing strain	17.015
DRR006526	Leaf Summer glycyrrhizin high producing strain	17.290

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	60.585
SRR2868004	Drought Stress(Tissue:root)	66.346
SRR2967015	Control (Tissue:root)	64.838

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	24.152
SRR9715740	Leave	32.752
SRR9715741	Leave	26.446
SRR9715739	Root	3.404
SRR9715742	Root	15.776
SRR9715743	Root	13.536

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	46.460
SRR8749028	MeJA induced 9h	33.013
SRR8749029	MeJA induced 9h	40.510
SRR8749030	Uninduced	43.939
SRR8749031	Uninduced	18.011
SRR8749032	Uninduced	19.414

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	47.217
SRR8400027	Control-Root	48.475