Gene detail information of Glyur000046s00004846.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G54390.1 | 1.00E-118 | HAL2-like |
| NR | XP_003593471.1 | 0 | PAP-specific phosphatase HAL2-like protein [Medicago truncatula] |
| COG | YP_007205281.1 | 2.00E-66 | 3'(2'),5'-bisphosphate nucleotidase, HAL2 family [Singulisphaera acidiphila DSM 18658] |
| Swissprot | tr|Q38945|DPNPH_ARATH | 1.00E-169 | PAP-specific phosphatase HAL2-like |
| trEMBL | tr|G7ILG2|G7ILG2_MEDTR | 0 | 3'(2'),5'-bisphosphate nucleotidase {ECO:0000313|EMBL:AES63722.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00046 | 373943 | 377684 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K01082 | cysQ, MET22, BPNT1 | EC:3.1.3.7 | Sulfur metabolism | map00920 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000046s00004846.1 | PF00459.20 | Inositol_P | 145 | 475 | 5.30E-53 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 3.880 |
| SRR1783600 | control | 3.702 |
| SRR1783602 | moderate drought stress | 3.139 |
| SRR1811619 | moderate drought stress | 3.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 5.961 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 5.741 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.925 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.788 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.207 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.020 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 6.554 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 6.690 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 5.809 |
| SRR2868004 | Drought Stress(Tissue:root) | 7.757 |
| SRR2967015 | Control (Tissue:root) | 8.948 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 6.061 |
| SRR9715740 | Leave | 7.184 |
| SRR9715741 | Leave | 5.994 |
| SRR9715739 | Root | 7.097 |
| SRR9715742 | Root | 5.867 |
| SRR9715743 | Root | 5.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.574 |
| SRR8749028 | MeJA induced 9h | 3.302 |
| SRR8749029 | MeJA induced 9h | 0.990 |
| SRR8749030 | Uninduced | 5.818 |
| SRR8749031 | Uninduced | 4.266 |
| SRR8749032 | Uninduced | 5.079 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 7.826 |
| SRR8400027 | Control-Root | 7.809 |