Gene detail information of Glyur000047s00003955.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G16760.10acyl-CoA oxidase 1
NRXP_003517411.20PREDICTED: peroxisomal acyl-coenzyme A oxidase 1-like [Glycine max]
COGYP_001109453.16.00E-78acyl-CoA oxidase [Saccharopolyspora erythraea NRRL 2338]
Swissprottr|O65202|ACOX1_ARATH0Peroxisomal acyl-coenzyme A oxidase 1
trEMBLtr|I1J9T7|I1J9T7_SOYBN0Acyl-coenzyme A oxidase {ECO:0000256|PIRNR:PIRNR000168}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000473472644996-


Gene family

Gene familysubfamily
Transcription Factors FamilyMYB-related


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00232E1.3.3.6, ACOX1, ACOX3 EC:1.3.3.6 Fatty acid metabolism map01212
Fatty acid degradationmap00071
alpha-Linolenic acid metabolismmap00592
Biosynthesis of unsaturated fatty acidsmap01040
cAMP signaling pathwaymap04024
Peroxisomemap04146
PPAR signaling pathwaymap03320


Gene Ontology

biological_process

GO:0006635  fatty acid beta-oxidation

GO:0008152  metabolic process

GO:0055114  oxidation-reduction process


cellular_component

GO:0005777  peroxisome


molecular_function

GO:0003676  nucleic acid binding

GO:0003677  DNA binding

GO:0003682  chromatin binding

GO:0003995  acyl-CoA dehydrogenase activity

GO:0003997  acyl-CoA oxidase activity

GO:0008270  zinc ion binding

GO:0016627  oxidoreductase activity, acting on the CH-CH group of donors

GO:0050660  flavin adenine dinucleotide binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000047s00003955.1PF00249.26Myb_DNA-binding1001447.20E-10
Glyur000047s00003955.1PF14749.1Acyl-CoA_ox_N4175321.50E-33
Glyur000047s00003955.1PF02770.14Acyl-CoA_dh_M5345921.50E-10
Glyur000047s00003955.1PF01756.14ACOX87610577.10E-54


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control35.536
SRR1783600control35.427
SRR1783602moderate drought stress33.595
SRR1811619moderate drought stress33.322

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain50.889
DRR006520Root Summer glycyrrhizin high producing strain50.353
DRR006521Root Winter glycyrrhizin high producing strain20.250
DRR006522Root Winter glycyrrhizin high producing strain19.845
DRR006523Root Summer glycyrrhizin low producing strain42.959
DRR006524Root Summer glycyrrhizin low producing strain43.307
DRR006525Leaf Summer glycyrrhizin high producing strain24.405
DRR006526Leaf Summer glycyrrhizin high producing strain23.995

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)55.775
SRR2868004Drought Stress(Tissue:root)48.041
SRR2967015Control (Tissue:root)50.933

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave25.911
SRR9715740Leave22.854
SRR9715741Leave24.030
SRR9715739Root10.427
SRR9715742Root37.464
SRR9715743Root32.039

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h27.779
SRR8749028MeJA induced 9h22.533
SRR8749029MeJA induced 9h28.257
SRR8749030Uninduced9.547
SRR8749031Uninduced6.802
SRR8749032Uninduced12.520

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root48.932
SRR8400027Control-Root54.192

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved