Gene detail information of Glyur000047s00003959.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G16780.13.00E-69homeobox protein 2
NRXP_003611347.15.35E-174Homeobox-leucine zipper protein HOX17 [Medicago truncatula]
Swissprottr|A5Y7H8|HAT4_ARATH5.00E-114Homeobox-leucine zipper protein HAT4
trEMBLtr|B7FJ62|B7FJ62_MEDTR2.00E-174Homeobox associated leucine zipper protein {ECO:0000313|EMBL:AES94305.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold000476786770544+


Gene family

Gene familysubfamily
Transcription Factors FamilyHB
EAR motif-containing ProteinsHB


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
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Gene Ontology

biological_process

GO:0006355  regulation of transcription, DNA-templated


cellular_component

GO:0005634  nucleus


molecular_function

GO:0003677  DNA binding

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000047s00003959.1PF04618.7HD-ZIP_N11132.70E-29
Glyur000047s00003959.1PF00046.24Homeobox1391935.80E-16
Glyur000047s00003959.1PF02183.13HALZ1952381.00E-18


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control7.149
SRR1783600control7.179
SRR1783602moderate drought stress14.683
SRR1811619moderate drought stress14.381

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.708
DRR006520Root Summer glycyrrhizin high producing strain7.638
DRR006521Root Winter glycyrrhizin high producing strain1.585
DRR006522Root Winter glycyrrhizin high producing strain1.490
DRR006523Root Summer glycyrrhizin low producing strain35.512
DRR006524Root Summer glycyrrhizin low producing strain35.609
DRR006525Leaf Summer glycyrrhizin high producing strain21.846
DRR006526Leaf Summer glycyrrhizin high producing strain21.506

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)37.729
SRR2868004Drought Stress(Tissue:root)32.015
SRR2967015Control (Tissue:root)53.832

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave15.556
SRR9715740Leave98.814
SRR9715741Leave17.866
SRR9715739Root17.075
SRR9715742Root21.428
SRR9715743Root18.751

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h12.954
SRR8749028MeJA induced 9h1.944
SRR8749029MeJA induced 9h4.608
SRR8749030Uninduced4.043
SRR8749031Uninduced3.770
SRR8749032Uninduced2.793

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root27.174
SRR8400027Control-Root30.197

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved