Gene detail information of Glyur000047s00003987.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G17570.3 | 5.00E-123 | GATA transcription factor 26 |
| NR | XP_003539085.1 | 0 | PREDICTED: GATA transcription factor 26-like [Glycine max] |
| Swissprot | tr|Q8W4H1|GAT26_ARATH | 3.00E-148 | GATA transcription factor 26 |
| trEMBL | tr|I1LGU6|I1LGU6_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G04060.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00047 | 222382 | 228288 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | C2C2-GATA |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000047s00003987.1 | PF00320.22 | GATA | 7 | 41 | 1.30E-13 |
| Glyur000047s00003987.1 | PF13919.1 | ASXH | 267 | 351 | 2.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.021 |
| SRR1783600 | control | 8.977 |
| SRR1783602 | moderate drought stress | 7.966 |
| SRR1811619 | moderate drought stress | 7.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 9.306 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 9.094 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 3.610 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 3.541 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.575 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.641 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.200 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.154 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 11.758 |
| SRR2868004 | Drought Stress(Tissue:root) | 16.854 |
| SRR2967015 | Control (Tissue:root) | 12.860 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 13.684 |
| SRR9715740 | Leave | 15.084 |
| SRR9715741 | Leave | 12.486 |
| SRR9715739 | Root | 2.580 |
| SRR9715742 | Root | 6.519 |
| SRR9715743 | Root | 6.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.092 |
| SRR8749028 | MeJA induced 9h | 7.646 |
| SRR8749029 | MeJA induced 9h | 7.740 |
| SRR8749030 | Uninduced | 6.190 |
| SRR8749031 | Uninduced | 7.211 |
| SRR8749032 | Uninduced | 4.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 10.141 |
| SRR8400027 | Control-Root | 9.770 |