Gene detail information of Glyur000047s00003988.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT2G22740.20SU(VAR)3-9 homolog 6
NRXP_004511737.10PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6-like [Cicer arietinum]
COGYP_003654072.11.00E-24SRA-YDG domain-containing protein [Thermobispora bispora DSM 43833]
Swissprottr|Q8VZ17|SUVH6_ARATH0Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6
trEMBLtr|K7K4X0|K7K4X0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G41340.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00047231481234600+


Gene family

Gene familysubfamily
Transcription Factors FamilySET


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K11420EHMT EC:2.1.1.43 Lysine degradation map00310
Longevity regulating pathway - mammalmap04211


Gene Ontology

biological_process

GO:0016571  histone methylation

GO:0034968  histone lysine methylation


cellular_component

GO:0005634  nucleus


molecular_function

GO:0005515  protein binding

GO:0008270  zinc ion binding

GO:0018024  histone-lysine N-methyltransferase activity

GO:0042393  histone binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000047s00003988.1PF02182.12SAD_SRA5877371.20E-59
Glyur000047s00003988.1PF05033.11Pre-SET7618581.50E-19
Glyur000047s00003988.1PF00856.23SET87710099.90E-25


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.705
SRR1783600control6.601
SRR1783602moderate drought stress8.126
SRR1811619moderate drought stress8.097

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain5.823
DRR006520Root Summer glycyrrhizin high producing strain5.766
DRR006521Root Winter glycyrrhizin high producing strain3.450
DRR006522Root Winter glycyrrhizin high producing strain3.448
DRR006523Root Summer glycyrrhizin low producing strain5.818
DRR006524Root Summer glycyrrhizin low producing strain5.520
DRR006525Leaf Summer glycyrrhizin high producing strain3.194
DRR006526Leaf Summer glycyrrhizin high producing strain3.224

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)7.783
SRR2868004Drought Stress(Tissue:root)8.004
SRR2967015Control (Tissue:root)7.497

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave5.234
SRR9715740Leave5.331
SRR9715741Leave5.573
SRR9715739Root0.731
SRR9715742Root4.711
SRR9715743Root3.825

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.037
SRR8749028MeJA induced 9h5.528
SRR8749029MeJA induced 9h2.621
SRR8749030Uninduced1.935
SRR8749031Uninduced2.086
SRR8749032Uninduced1.615

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root7.231
SRR8400027Control-Root7.120

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved