Gene detail information of Glyur000047s00003992.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G41150.10Restriction endonuclease, type II-like superfamily protein
NRXP_006590585.10PREDICTED: DNA repair endonuclease UVH1-like isoform X1 [Glycine max]
COGYP_006923025.18.00E-15Hef nuclease [Methanolobus psychrophilus R15]
Swissprottr|Q9LKI5|XPF_ARATH0DNA repair endonuclease UVH1
trEMBLtr|K7LMX5|K7LMX5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G04113.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00047250056255015-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K10848ERCC4, XPF EC:3.1.-.- Nucleotide excision repair map03420
Fanconi anemia pathwaymap03460


Gene Ontology

biological_process

GO:0006259  DNA metabolic process


molecular_function

GO:0003677  DNA binding

GO:0004518  nuclease activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000047s00003992.1PF02732.10ERCC47598889.50E-27


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control6.440
SRR1783600control6.422
SRR1783602moderate drought stress7.944
SRR1811619moderate drought stress7.922

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.905
DRR006520Root Summer glycyrrhizin high producing strain7.963
DRR006521Root Winter glycyrrhizin high producing strain7.336
DRR006522Root Winter glycyrrhizin high producing strain7.090
DRR006523Root Summer glycyrrhizin low producing strain5.526
DRR006524Root Summer glycyrrhizin low producing strain5.760
DRR006525Leaf Summer glycyrrhizin high producing strain6.552
DRR006526Leaf Summer glycyrrhizin high producing strain6.341

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)12.030
SRR2868004Drought Stress(Tissue:root)14.155
SRR2967015Control (Tissue:root)14.640

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave36.945
SRR9715740Leave40.314
SRR9715741Leave59.460
SRR9715739Root2.950
SRR9715742Root18.086
SRR9715743Root16.232

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h8.593
SRR8749028MeJA induced 9h9.714
SRR8749029MeJA induced 9h8.473
SRR8749030Uninduced9.573
SRR8749031Uninduced10.817
SRR8749032Uninduced13.706

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root16.589
SRR8400027Control-Root14.842

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved