Gene detail information of Glyur000047s00004005.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G17090.10chloroplast beta-amylase
NRXP_003539125.10PREDICTED: beta-amylase 3, chloroplastic-like isoform 1 [Glycine max]
COGYP_005034908.17.00E-50putative beta-amylase precursor [Bacteriovorax marinus SJ]
Swissprottr|O23553|BAM3_ARATH0Beta-amylase 3, chloroplastic (Precursor)
trEMBLtr|I1LGW4|I1LGW4_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G04210.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00047303842306805-


Gene family

Gene familysubfamily
Carbohydrate-Active enzymes FamilyGH14


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01177E3.2.1.2 EC:3.2.1.2 Starch and sucrose metabolism map00500


Gene Ontology

biological_process

GO:0000272  polysaccharide catabolic process

GO:0005975  carbohydrate metabolic process


molecular_function

GO:0016161  beta-amylase activity


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000047s00004005.1PF01373.12Glyco_hydro_14774923.20E-155


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.084
SRR1783600control2.079
SRR1783602moderate drought stress1.775
SRR1811619moderate drought stress1.753

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain25.546
DRR006520Root Summer glycyrrhizin high producing strain25.222
DRR006521Root Winter glycyrrhizin high producing strain919.303
DRR006522Root Winter glycyrrhizin high producing strain896.336
DRR006523Root Summer glycyrrhizin low producing strain34.429
DRR006524Root Summer glycyrrhizin low producing strain34.372
DRR006525Leaf Summer glycyrrhizin high producing strain44.363
DRR006526Leaf Summer glycyrrhizin high producing strain44.418

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)4.044
SRR2868004Drought Stress(Tissue:root)4.497
SRR2967015Control (Tissue:root)11.269

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave58.372
SRR9715740Leave70.516
SRR9715741Leave74.873
SRR9715739Root2.116
SRR9715742Root6.183
SRR9715743Root6.130

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h5.562
SRR8749028MeJA induced 9h3.167
SRR8749029MeJA induced 9h3.068
SRR8749030Uninduced0.203
SRR8749031Uninduced0.163
SRR8749032Uninduced0.151

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root2.214
SRR8400027Control-Root3.368

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved