Gene detail information of Glyur000047s00004013.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G47040.10lon protease 2
NRXP_003611421.10Lon protease-like protein [Medicago truncatula]
COGYP_003692368.10ATP-dependent protease La [Starkeya novella DSM 506]
Swissprottr|O04979|LONP2_SPIOL0Lon protease homolog 2, peroxisomal {ECO:0000255|HAMAP-Rule:MF_03121}
trEMBLtr|G7JYP5|G7JYP5_MEDTR0Lon protease homolog 2, peroxisomal {ECO:0000256|HAMAP-Rule:MF_03121}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00047425722434116+


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K01338lon EC:3.4.21.53 Cell cycle - Caulobacter map04112


Gene Ontology

biological_process

GO:0006508  proteolysis

GO:0006515  misfolded or incompletely synthesized protein catabolic process

GO:0030163  protein catabolic process


molecular_function

GO:0004176  ATP-dependent peptidase activity

GO:0004252  serine-type endopeptidase activity

GO:0005524  ATP binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000047s00004013.1PF02190.11LON112655.90E-30
Glyur000047s00004013.1PF00004.24AAA4165603.40E-21
Glyur000047s00004013.1PF05362.8Lon_C6888828.70E-67


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.739
SRR1783600control8.807
SRR1783602moderate drought stress9.124
SRR1811619moderate drought stress8.999

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain7.080
DRR006520Root Summer glycyrrhizin high producing strain6.793
DRR006521Root Winter glycyrrhizin high producing strain11.638
DRR006522Root Winter glycyrrhizin high producing strain11.372
DRR006523Root Summer glycyrrhizin low producing strain16.172
DRR006524Root Summer glycyrrhizin low producing strain16.571
DRR006525Leaf Summer glycyrrhizin high producing strain13.378
DRR006526Leaf Summer glycyrrhizin high producing strain13.217

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)21.125
SRR2868004Drought Stress(Tissue:root)34.279
SRR2967015Control (Tissue:root)31.623

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave75.288
SRR9715740Leave71.619
SRR9715741Leave98.296
SRR9715739Root7.587
SRR9715742Root28.657
SRR9715743Root24.415

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h10.989
SRR8749028MeJA induced 9h19.213
SRR8749029MeJA induced 9h10.482
SRR8749030Uninduced16.526
SRR8749031Uninduced9.459
SRR8749032Uninduced6.142

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.039
SRR8400027Control-Root21.790

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved