Gene detail information of Glyur000047s00004016.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G47010.10RNA helicase, putative
NRXP_003517385.10PREDICTED: regulator of nonsense transcripts 1 homolog [Glycine max]
COGNP_214409.13.00E-64DNA helicase [Aquifex aeolicus VF5]
Swissprottr|Q9FJR0|RENT1_ARATH0Regulator of nonsense transcripts 1 homolog
trEMBLtr|I1J9N5|I1J9N5_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA01G41110.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00047455496467534-


Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14326UPF1, RENT1 EC:3.6.4.- RNA transport map03013
mRNA surveillance pathwaymap03015


Gene Ontology

biological_process

GO:0000184  nuclear-transcribed mRNA catabolic process, nonsense-mediated decay


cellular_component

GO:0005737  cytoplasm


molecular_function

GO:0003677  DNA binding

GO:0004386  helicase activity

GO:0005524  ATP binding

GO:0008270  zinc ion binding

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000047s00004016.1PF09416.5UPF1_Zn_bind1302273.80E-46
Glyur000047s00004016.1PF13086.1AAA_114476519.20E-54
Glyur000047s00004016.1PF13087.1AAA_126598552.00E-59


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control32.624
SRR1783600control32.824
SRR1783602moderate drought stress36.566
SRR1811619moderate drought stress36.355

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain30.240
DRR006520Root Summer glycyrrhizin high producing strain29.801
DRR006521Root Winter glycyrrhizin high producing strain38.571
DRR006522Root Winter glycyrrhizin high producing strain37.501
DRR006523Root Summer glycyrrhizin low producing strain33.902
DRR006524Root Summer glycyrrhizin low producing strain33.659
DRR006525Leaf Summer glycyrrhizin high producing strain23.065
DRR006526Leaf Summer glycyrrhizin high producing strain22.930

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)68.361
SRR2868004Drought Stress(Tissue:root)68.031
SRR2967015Control (Tissue:root)75.955

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave37.638
SRR9715740Leave38.620
SRR9715741Leave45.546
SRR9715739Root20.180
SRR9715742Root66.063
SRR9715743Root54.139

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h32.003
SRR8749028MeJA induced 9h48.430
SRR8749029MeJA induced 9h22.130
SRR8749030Uninduced23.144
SRR8749031Uninduced21.244
SRR8749032Uninduced15.969

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root72.904
SRR8400027Control-Root63.053

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved