Gene detail information of Glyur000048s00002208.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G15100.1 | 4.00E-11 | RING-H2 finger A2A |
| NR | XP_006585295.1 | 1.64E-77 | PREDICTED: E3 ubiquitin-protein ligase RING1-like [Glycine max] |
| Swissprot | tr|Q9ZT50|RHA2A_ARATH | 3.00E-13 | E3 ubiquitin-protein ligase RHA2A |
| trEMBL | tr|K7L6L1|K7L6L1_SOYBN | 6.00E-78 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G14801.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00048 | 97546 | 98049 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Ubiquitin Family | RING |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000048s00002208.1 | PF13639.1 | zf-RING_2 | 73 | 118 | 3.00E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.064 |
| SRR1783600 | control | 1.233 |
| SRR1783602 | moderate drought stress | 2.094 |
| SRR1811619 | moderate drought stress | 1.759 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.859 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.816 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.039 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.683 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 3.363 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.925 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 3.135 |
| SRR2868004 | Drought Stress(Tissue:root) | 1.199 |
| SRR2967015 | Control (Tissue:root) | 1.920 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 0.509 |
| SRR9715740 | Leave | 0.624 |
| SRR9715741 | Leave | 0.762 |
| SRR9715739 | Root | 0.077 |
| SRR9715742 | Root | 0.326 |
| SRR9715743 | Root | 0.085 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.704 |
| SRR8749028 | MeJA induced 9h | 1.209 |
| SRR8749029 | MeJA induced 9h | 4.319 |
| SRR8749030 | Uninduced | 0.891 |
| SRR8749031 | Uninduced | 5.440 |
| SRR8749032 | Uninduced | 7.598 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.638 |
| SRR8400027 | Control-Root | 2.411 |