Gene detail information of Glyur000048s00002213.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT5G10030.23.00E-118TGACG motif-binding factor 4
NRXP_004504037.10PREDICTED: transcription factor TGA4-like isoform X3 [Cicer arietinum]
Swissprottr|Q39162|TGA4_ARATH9.00E-159Transcription factor TGA4
trEMBLtr|K7L6L7|K7L6L7_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G14840.4}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00048112997117599+


Gene family

Gene familysubfamily
Transcription Factors FamilybZIP


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
----------


Gene Ontology

biological_process

GO:0006351  transcription, DNA-templated

GO:0006355  regulation of transcription, DNA-templated


molecular_function

GO:0003700  transcription factor activity, sequence-specific DNA binding

GO:0043565  sequence-specific DNA binding


Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000048s00002213.1PF00170.16bZIP_1741046.30E-09
Glyur000048s00002213.1PF14144.1DOG11612384.10E-28


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control8.355
SRR1783600control8.689
SRR1783602moderate drought stress13.180
SRR1811619moderate drought stress12.563

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain15.741
DRR006520Root Summer glycyrrhizin high producing strain14.336
DRR006521Root Winter glycyrrhizin high producing strain47.074
DRR006522Root Winter glycyrrhizin high producing strain45.518
DRR006523Root Summer glycyrrhizin low producing strain21.760
DRR006524Root Summer glycyrrhizin low producing strain22.313
DRR006525Leaf Summer glycyrrhizin high producing strain2.331
DRR006526Leaf Summer glycyrrhizin high producing strain2.277

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.887
SRR2868004Drought Stress(Tissue:root)38.851
SRR2967015Control (Tissue:root)45.101

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.680
SRR9715740Leave5.339
SRR9715741Leave20.587
SRR9715739Root4.333
SRR9715742Root10.233
SRR9715743Root8.675

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.155
SRR8749028MeJA induced 9h22.979
SRR8749029MeJA induced 9h32.920
SRR8749030Uninduced19.319
SRR8749031Uninduced31.246
SRR8749032Uninduced23.323

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root20.016
SRR8400027Control-Root15.422

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved