Gene detail information of Glyur000048s00002214.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT4G39660.10alanine:glyoxylate aminotransferase 2
NRXP_004504034.10PREDICTED: alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial-like [Cicer arietinum]
COGYP_001817512.13.00E-180class III aminotransferase [Opitutus terrae PB90-1]
Swissprottr|Q940M2|AGT21_ARATH0Alanine--glyoxylate aminotransferase 2 homolog 1, mitochondrial (Precursor)
trEMBLtr|B7FLF5|B7FLF5_MEDTR0Alanine-glyoxylate aminotransferase-like protein {ECO:0000313|EMBL:AET04571.1}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00048118167121821-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K00827AGXT2 EC:2.6.1.44 2.6.1.40 Alanine, aspartate and glutamate metabolism map00250
Glycine, serine and threonine metabolismmap00260
Cysteine and methionine metabolismmap00270
Valine, leucine and isoleucine degradationmap00280


Gene Ontology

molecular_function

GO:0003824  catalytic activity

GO:0008483  transaminase activity

GO:0030170  pyridoxal phosphate binding



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000048s00002214.1PF00202.16Aminotran_3954261.40E-81


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control2.174
SRR1783600control2.152
SRR1783602moderate drought stress3.952
SRR1811619moderate drought stress3.846

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain4.539
DRR006520Root Summer glycyrrhizin high producing strain4.405
DRR006521Root Winter glycyrrhizin high producing strain3.598
DRR006522Root Winter glycyrrhizin high producing strain3.606
DRR006523Root Summer glycyrrhizin low producing strain5.792
DRR006524Root Summer glycyrrhizin low producing strain5.560
DRR006525Leaf Summer glycyrrhizin high producing strain12.824
DRR006526Leaf Summer glycyrrhizin high producing strain12.947

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)25.926
SRR2868004Drought Stress(Tissue:root)13.948
SRR2967015Control (Tissue:root)16.736

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave4.578
SRR9715740Leave0.657
SRR9715741Leave2.470
SRR9715739Root0.000
SRR9715742Root3.994
SRR9715743Root3.301

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h6.803
SRR8749028MeJA induced 9h4.053
SRR8749029MeJA induced 9h6.359
SRR8749030Uninduced3.139
SRR8749031Uninduced10.343
SRR8749032Uninduced10.304

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root14.160
SRR8400027Control-Root15.379

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State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved