Gene detail information of Glyur000048s00002220.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G14540.1 | 1.00E-51 | nuclear factor Y, subunit B3 |
| NR | XP_003532849.1 | 7.33E-119 | PREDICTED: nuclear transcription factor Y subunit B-7-like [Glycine max] |
| Swissprot | tr|O23310|NFYB3_ARATH | 9.00E-64 | Nuclear transcription factor Y subunit B-3 |
| trEMBL | tr|K7L6M6|K7L6M6_SOYBN | 3.00E-119 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G14931.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information(JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold00048 | 156164 | 156889 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | NF-YB |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur000048s00002220.1 | PF00808.18 | CBFD_NFYB_HMF | 34 | 98 | 1.50E-27 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.599 |
| SRR1783600 | control | 4.707 |
| SRR1783602 | moderate drought stress | 14.305 |
| SRR1811619 | moderate drought stress | 13.883 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.700 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.352 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.668 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.600 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.939 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.322 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.653 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.524 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress(Tissue:root) | 2.797 |
| SRR2868004 | Drought Stress(Tissue:root) | 2.146 |
| SRR2967015 | Control (Tissue:root) | 2.506 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leave | 1.521 |
| SRR9715740 | Leave | 0.560 |
| SRR9715741 | Leave | 0.275 |
| SRR9715739 | Root | 1.750 |
| SRR9715742 | Root | 3.594 |
| SRR9715743 | Root | 2.425 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.002 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.029 |
| SRR8749030 | Uninduced | 0.088 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.018 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment-Root | 3.668 |
| SRR8400027 | Control-Root | 8.066 |