Gene detail

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Gene detail information of Glyur000048s00002228.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G21940.4	5.00E-90	shikimate kinase 1
NR	AFK43283.1	2.11E-168	unknown [Lotus japonicus]
COG	YP_007080389.1	1.00E-40	shikimate kinase [Pleurocapsa sp. PCC 7327]
Swissprot	tr\|Q9SJ05\|SK1_ARATH	2.00E-110	Shikimate kinase 1, chloroplastic (Precursor)
trEMBL	tr\|I3SSP1\|I3SSP1_LOTJA	8.00E-169	Uncharacterized protein {ECO:0000313\|EMBL:AFK43283.1}

Sequence

Transcript Sequence

>Glyur000048s00002228.1
CGTGAAACAGGAGTTTTTTGGATCGTTGTGAATAAGAAACAGGATAAGAGAAAATTCCGCAGAAAGCAAAAGAATATCACCAAACAATTCCACTCTCAAAATCCCTTTTCAACTATAACAANATTCCACTCTCTCAACAGAATATCTCGCTGATCCATTCCAATTAGATTCCACCTCTCTGCACTGCAGNAGCGCCTCTTTTCGTTTTGGTCAAAGCCGCAAGTCCGCAACATATAGCAGTGCTGCAGCAGGTGCAATTTATAGAGGTGAAGGCGTGAANCAATGGATGCTAAGGCTGCGCAAGTGCTGCAACTTCCGGGTTTGGTGCAACCCGAAAAGGTTGGGAGAAGAACCGGTTGCCGTTTGAGTCGAACCGGGGAACCGCAGAAGCTTCGGGTTTTTGTTTCCGGCAAGTTGCATTCANCGATTCGGCGCAGGATAGCCCCTTTGGAGGTTGCTTGTTCTTACGACAAAATTCCAGCTTCAACATTGCAATCNGGAAGCCATAAGGCTTACCTTGATGAAGAGTTGATTCTGAAGAATAGATCACAACAGATCCAGCCTTATTTAAATGGACGCTGCATATATCTTGTTGGAATGATGGGCTCTGGGAAGACAACTGTGGGGAAGATTATGTCACAAGTGCTTAGTTATTCATTTTGTGATTGCGATACATTGATTGAGGAAGAGGCTGGTGGAAACTCTGTAGCTGATATATTCAAGCACTATGGAGAATCTTTCTTTCGTGATAAGGAGACTGAGGCATTGCATAAGCTGTCTCTGATGCATAGACTTGTTATTTCTACTGGTGGAGGTGCTGTTATGAGGCCCATCAATTGGANATATATGCACAAGGGGATTAGTGTTTGGCTGGACGTACCATTGGAAGCATTGGCACAAAGAATTGCAGCTGTAGGAACTAATTCTCGCCCCCTTCTACATTATGAAGCGGGGGATGCATACACCAGGGCTTTGATGCGTTTGTCTGCTCTTTTTGAAGAGAGAGGTGAAGCATATGCCAACGCCAATGCCAGGGTCTCATTAGAAAATATAGCAACAAAACTGGGCCGAAGAGACGTGTCCGATTTGTCTCCAACTGCTATTGCAATTGAGGCGCTAGAACAAATTGACAACTTTTTGAAGGCTGAAGATGGTGGTTATGCAGGATGCTAGTACAAAATTTGGACACAAGCATGTTGTGATTGTTTATTTTTTTCTTGCAATTTGCAATTAAGGTCATGATGTTGTGCAGTGTTTTTTTTTATTTGTGTGGAAAAAAAGGCATACAAATAAATGTAACATGGCACATGTTTATGCATAATTTGTGCTGGCAATTAAGCATAATCTGACAGCCAATAGCAACAGTATTAAATTTATACGTTTTGTTTATTGTTGATGTATATATTCTTGTAGACGAGGTGTGTGTTGTTGTCCGAGTTCGGTTGATCAGCTTGTGTGTGCATTCCTGTAAAGTGACA

Protein Sequence

Location information(JBrowse)

Scaffold	Start	End	Strand
Scaffold00048	185624	190857	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00891	E2.7.1.71, aroK, aroL	EC:2.7.1.71	Biosynthesis of amino acids	map01230
K00891	E2.7.1.71, aroK, aroL	EC:2.7.1.71	Phenylalanine, tyrosine and tryptophan biosynthesis	map00400

Gene Ontology

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur000048s00002228.1	PF01202.17	SKI	107	272	2.70E-43

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	15.545
SRR1783600	control	16.028
SRR1783602	moderate drought stress	19.304
SRR1811619	moderate drought stress	18.987

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	27.049
DRR006520	Root Summer glycyrrhizin high producing strain	26.715
DRR006521	Root Winter glycyrrhizin high producing strain	16.208
DRR006522	Root Winter glycyrrhizin high producing strain	15.787
DRR006523	Root Summer glycyrrhizin low producing strain	40.652
DRR006524	Root Summer glycyrrhizin low producing strain	41.270
DRR006525	Leaf Summer glycyrrhizin high producing strain	13.754
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.068

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress(Tissue:root)	54.047
SRR2868004	Drought Stress(Tissue:root)	64.839
SRR2967015	Control (Tissue:root)	80.229

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leave	32.320
SRR9715740	Leave	22.984
SRR9715741	Leave	29.506
SRR9715739	Root	19.844
SRR9715742	Root	38.045
SRR9715743	Root	32.015

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	13.902
SRR8749028	MeJA induced 9h	12.511
SRR8749029	MeJA induced 9h	14.505
SRR8749030	Uninduced	19.659
SRR8749031	Uninduced	21.281
SRR8749032	Uninduced	15.432

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment-Root	56.056
SRR8400027	Control-Root	38.518