Gene detail information of Glyur000048s00002248.1


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G10490.10Domain of unknown function (DUF1726) ;Putative ATPase (DUF699)
NRXP_004504007.10PREDICTED: UPF0202 protein At1g10490-like [Cicer arietinum]
COGNP_578233.12.00E-74DNA helicase [Pyrococcus furiosus DSM 3638]
Swissprottr|Q9XIK4|U202A_ARATH0UPF0202 protein At1g10490
trEMBLtr|K7L6P0|K7L6P0_SOYBN0Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA08G15130.2}

Sequence

Transcript Sequence
Protein Sequence


Location information(JBrowse)

ScaffoldStartEndStrand
Scaffold00048273118284695-


Gene family

Gene familysubfamily
----


KEGG pathway

KO Enzyme Enzyme ID pathway mapID
K14521NAT10, KRE33 EC:2.3.1.- Ribosome biogenesis in eukaryotes map03008


Gene Ontology

molecular_function

GO:0008080  N-acetyltransferase activity



Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur000048s00002248.1PF08351.6DUF17261062001.40E-36
Glyur000048s00002248.1PF05127.9Helicase_RecD2814781.30E-62
Glyur000048s00002248.1PF13718.1GNAT_acetyltr_25187475.30E-75
Glyur000048s00002248.1PF13725.1tRNA_bind_27698917.20E-23


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control16.626
SRR1783600control16.696
SRR1783602moderate drought stress21.279
SRR1811619moderate drought stress21.041

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain23.381
DRR006520Root Summer glycyrrhizin high producing strain22.890
DRR006521Root Winter glycyrrhizin high producing strain13.263
DRR006522Root Winter glycyrrhizin high producing strain12.829
DRR006523Root Summer glycyrrhizin low producing strain18.506
DRR006524Root Summer glycyrrhizin low producing strain18.562
DRR006525Leaf Summer glycyrrhizin high producing strain8.760
DRR006526Leaf Summer glycyrrhizin high producing strain8.726

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress(Tissue:root)23.755
SRR2868004Drought Stress(Tissue:root)18.992
SRR2967015Control (Tissue:root)17.350

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leave6.587
SRR9715740Leave10.875
SRR9715741Leave8.216
SRR9715739Root2.059
SRR9715742Root19.781
SRR9715743Root18.075

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h26.435
SRR8749028MeJA induced 9h19.899
SRR8749029MeJA induced 9h18.425
SRR8749030Uninduced3.612
SRR8749031Uninduced2.736
SRR8749032Uninduced3.214

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment-Root25.314
SRR8400027Control-Root21.603

© 2021 Resource Institute for Chinese & Ethnic Materia Medica ,Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved